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Physiome 4e9 - Hh Sodium Current Estimation Task Lab

About lab

Source-faithful physiology lab for HH Sodium Current model for estimation task. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagephysiome-4e9-hh-sodium-current-estimation-task-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_sodium_h_gate",
        "label": "Initial Sodium H Gate",
        "maps_to": "physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model.initial_sodium_h_gate",
        "description": "Initial value for Sodium H Gate. Maps to source symbol `h`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_sodium_m_gate",
        "label": "Initial Sodium M Gate",
        "maps_to": "physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model.initial_sodium_m_gate",
        "description": "Initial value for Sodium M Gate. Maps to source symbol `m`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model.variable_labels"
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current",
        "label": "Sodium Current",
        "maps_to": "physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model.sodium_current",
        "description": "Sodium Current. Maps to source symbol `i_Na`. Units: microA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_h_gate",
        "label": "Sodium H Gate",
        "maps_to": "physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model.sodium_h_gate",
        "description": "Sodium H Gate. Maps to source symbol `h`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_m_gate",
        "label": "Sodium M Gate",
        "maps_to": "physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model.sodium_m_gate",
        "description": "Sodium M Gate. Maps to source symbol `m`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "alpha_h",
        "label": "Alpha H",
        "maps_to": "physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model.alpha_h",
        "description": "Alpha H. Maps to source symbol `alpha_h`. Units: per_millisec. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "alpha_m",
        "label": "Alpha M",
        "maps_to": "physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model.alpha_m",
        "description": "Alpha M. Maps to source symbol `alpha_m`. Units: per_millisec. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Physiome 4e9 - Hh Sodium Current Estimation Task Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model",
      "alias": "physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model",
      "parameters": {
        "model_path": "data/sodium_ion_channel.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model_state"
      ],
      "from": "physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model_summary"
      ],
      "from": "physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model_trajectory"
      ],
      "from": "physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model_variable_labels"
      ],
      "from": "physiology_cellml_hh_sodium_current_model_for_estimation_task_4e9_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for HH Sodium Current model for estimation task. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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