Bruggeman2005_AmmoniumAssimilation Lab

{
  "io": {
    "inputs": [
      {
        "name": "external_ammonium",
        "maps_to": "bruggeman2005_ammonium_assimilation.external_ammonium"
      },
      {
        "name": "alpha_ketoglutarate_pool",
        "maps_to": "bruggeman2005_ammonium_assimilation.alpha_ketoglutarate_pool"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "bruggeman2005_ammonium_assimilation.state"
      },
      {
        "name": "summary",
        "maps_to": "bruggeman2005_ammonium_assimilation.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "bruggeman2005_ammonium_assimilation.species_labels"
      },
      {
        "name": "pii_regulatory_protein",
        "maps_to": "bruggeman2005_ammonium_assimilation.pii_regulatory_protein"
      },
      {
        "name": "uridine_triphosphate",
        "maps_to": "bruggeman2005_ammonium_assimilation.uridine_triphosphate"
      },
      {
        "name": "uridylylated_pii_protein",
        "maps_to": "bruggeman2005_ammonium_assimilation.uridylylated_pii_protein"
      },
      {
        "name": "inorganic_pyrophosphate",
        "maps_to": "bruggeman2005_ammonium_assimilation.inorganic_pyrophosphate"
      }
    ]
  },
  "title": "Bruggeman2005_AmmoniumAssimilation Lab",
  "models": [
    {
      "path": "owned/models/bruggeman2005_ammonium_assimilation",
      "alias": "bruggeman2005_ammonium_assimilation",
      "provenance": {
        "owned_path": "owned/models/bruggeman2005_ammonium_assimilation"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.bruggeman2005_ammonium_assimilation_state"
      ],
      "from": "bruggeman2005_ammonium_assimilation.state"
    },
    {
      "to": [
        "visualisation.bruggeman2005_ammonium_assimilation_summary"
      ],
      "from": "bruggeman2005_ammonium_assimilation.summary"
    },
    {
      "to": [
        "visualisation.bruggeman2005_ammonium_assimilation_species_labels"
      ],
      "from": "bruggeman2005_ammonium_assimilation.species_labels"
    },
    {
      "to": [
        "visualisation.bruggeman2005_ammonium_assimilation_pii_regulatory_protein"
      ],
      "from": "bruggeman2005_ammonium_assimilation.pii_regulatory_protein"
    },
    {
      "to": [
        "visualisation.bruggeman2005_ammonium_assimilation_uridine_triphosphate"
      ],
      "from": "bruggeman2005_ammonium_assimilation.uridine_triphosphate"
    },
    {
      "to": [
        "visualisation.bruggeman2005_ammonium_assimilation_uridylylated_pii_protein"
      ],
      "from": "bruggeman2005_ammonium_assimilation.uridylylated_pii_protein"
    },
    {
      "to": [
        "visualisation.bruggeman2005_ammonium_assimilation_inorganic_pyrophosphate"
      ],
      "from": "bruggeman2005_ammonium_assimilation.inorganic_pyrophosphate"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Curated microbiology lab for Bruggeman2005_AmmoniumAssimilation. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
  "schema_version": "2.0"
}