BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Warren2009 Calciumwavepropagation Lab

About lab

This a model from the article: Mathematical modelling of calcium wave propagation in mammalian airwayepithelium: evidence for regenerative ATP release. It can be used to explore systemsbiology warren2009 calciumwavepropagation model1006230018 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagewarren2009-calciumwavepropagation-lab
Created2026-05-17
Updated2026-05-17
generegulationmetabolismphysiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_volume_ca_i",
        "label": "Initial Volume Ca I",
        "maps_to": "systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model.initial_volume_ca_i",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `volumeCa_i`."
      },
      {
        "name": "initial_volume_ca_er",
        "label": "Initial Volume Ca Er",
        "maps_to": "systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model.initial_volume_ca_er",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `volumeCa_er`."
      },
      {
        "name": "initial_volume_iip3",
        "label": "Initial Volume Iip3",
        "maps_to": "systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model.initial_volume_iip3",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `volume_iIP3`."
      },
      {
        "name": "initial_pip2",
        "label": "Initial Pip2",
        "maps_to": "systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model.initial_pip2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PIP2`."
      },
      {
        "name": "initial_model_state_i2",
        "label": "Initial Model State I2",
        "maps_to": "systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model.initial_model_state_i2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `I2`."
      },
      {
        "name": "initial_model_state_i1",
        "label": "Initial Model State I1",
        "maps_to": "systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model.initial_model_state_i1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `I1`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model.species_labels"
      },
      {
        "name": "volume_ca_i",
        "maps_to": "systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model.volume_ca_i"
      },
      {
        "name": "volume_ca_er",
        "maps_to": "systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model.volume_ca_er"
      },
      {
        "name": "volume_iip3",
        "maps_to": "systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model.volume_iip3"
      },
      {
        "name": "pip2",
        "maps_to": "systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model.pip2"
      },
      {
        "name": "model_state_i2",
        "maps_to": "systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model.model_state_i2"
      },
      {
        "name": "model_state_i1",
        "maps_to": "systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model.model_state_i1"
      }
    ]
  },
  "tags": [
    "generegulation",
    "metabolism",
    "physiology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Warren2009 Calciumwavepropagation Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model",
      "alias": "systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model_state"
      ],
      "from": "systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model_summary"
      ],
      "from": "systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model_species_labels"
      ],
      "from": "systemsbiology_sbml_warren2009_calciumwavepropagation_model1006230018_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This a model from the article: Mathematical modelling of calcium wave propagation in mammalian airwayepithelium: evidence for regenerative ATP release. It can be used to explore systemsbiology warren2009 calciumwavepropagation model1006230018 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.