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Zhou2015 - Circadian clock with immune regulator NPR1 Lab

About lab

Zhou2015 - Circadian clock with immuneregulator NPR1 Arabidopsis clock model modified fromP2012 (Pokhilko et al., 2013 - BIOMD0000000445 )model to include the master immune regulator NPR1 coupling to. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagezhou2015-circadian-clock-with-immune-regulator-npr1-lab
Created2026-05-15
Updated2026-05-15
immunologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_cabar_m",
        "label": "Initial Cabar M",
        "units": "native source value",
        "default": 0.856,
        "maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.initial_cabar_m",
        "description": "Initial Cabar M. Sets the initial value of bundled SBML species `species_1`."
      },
      {
        "name": "initial_unresolved_source_observable_2",
        "label": "Initial Unresolved Source Observable 2",
        "units": "native source value",
        "default": 0.4027,
        "maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.initial_unresolved_source_observable_2",
        "description": "Initial Unresolved Source Observable 2. Sets the initial value of bundled SBML species `species_2`."
      },
      {
        "name": "initial_unresolved_source_observable_3",
        "label": "Initial Unresolved Source Observable 3",
        "units": "native source value",
        "default": 0.2362,
        "maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.initial_unresolved_source_observable_3",
        "description": "Initial Unresolved Source Observable 3. Sets the initial value of bundled SBML species `species_3`."
      },
      {
        "name": "initial_unresolved_source_observable_4",
        "label": "Initial Unresolved Source Observable 4",
        "units": "native source value",
        "default": 0.2843,
        "maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.initial_unresolved_source_observable_4",
        "description": "Initial Unresolved Source Observable 4. Sets the initial value of bundled SBML species `species_4`."
      },
      {
        "name": "initial_unresolved_signaling_observable_2",
        "label": "Initial Unresolved Signaling Observable 2",
        "units": "native source value",
        "default": 1.3143,
        "maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.initial_unresolved_signaling_observable_2",
        "description": "Initial Unresolved Signaling Observable 2. Sets the initial value of bundled SBML species `cCOP1c`."
      }
    ],
    "outputs": [
      {
        "name": "cabar_m",
        "maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.cabar_m"
      },
      {
        "name": "unresolved_source_observable_2",
        "maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.unresolved_source_observable_2"
      },
      {
        "name": "unresolved_source_observable_3",
        "maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.unresolved_source_observable_3"
      },
      {
        "name": "unresolved_source_observable_4",
        "maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.unresolved_source_observable_4"
      },
      {
        "name": "unresolved_signaling_observable_2",
        "maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.unresolved_signaling_observable_2"
      },
      {
        "name": "state",
        "maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.state"
      },
      {
        "name": "summary",
        "maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.species_labels"
      }
    ]
  },
  "title": "Zhou2015 - Circadian clock with immune regulator NPR1 Lab",
  "models": [
    {
      "path": "owned/models/immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model",
      "alias": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model",
      "provenance": {
        "owned_path": "owned/models/immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model_state"
      ],
      "from": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.state"
    },
    {
      "to": [
        "visualisation.immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model_summary"
      ],
      "from": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.summary"
    },
    {
      "to": [
        "visualisation.immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model_species_labels"
      ],
      "from": "immunology_sbml_zhou2015_circadian_clock_with_immune_regulator_n_biomd0000000577_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Zhou2015 - Circadian clock with immuneregulator NPR1 Arabidopsis clock model modified fromP2012 (Pokhilko et al., 2013 - BIOMD0000000445 )model to include the master immune regulator NPR1 coupling to. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.",
  "schema_version": "2.0"
}

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