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Biomodels model2409150001 - Nad Labelling Dynamics Lab

About lab

Source-faithful physiology lab for NAD labelling dynamics. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagebiomodels-model2409150001-nad-labelling-dynamics-lab
Created2026-05-23
Updated2026-05-23
physiologysbmlbiomodels_ebifaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_glucose_l",
        "label": "Initial Glucose L",
        "maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.initial_glucose_l",
        "description": "Initial value for Glucose L. Maps to source symbol `Glucose_L`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "initial_atp_concentration",
        "label": "Initial ATP Concentration",
        "maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.initial_atp_concentration",
        "description": "Initial value for ATP Concentration. Maps to source symbol `ATP`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.trajectory"
      },
      {
        "name": "species_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.species_labels"
      },
      {
        "name": "glucose_l",
        "label": "Glucose L",
        "maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.glucose_l",
        "description": "Glucose L. Maps to source symbol `Glucose_L`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "atp_concentration",
        "label": "ATP Concentration",
        "maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.atp_concentration",
        "description": "ATP Concentration. Maps to source symbol `ATP`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "atp_l",
        "label": "ATP L",
        "maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.atp_l",
        "description": "ATP L. Maps to source symbol `ATP_L`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "glucose",
        "label": "Glucose",
        "maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.glucose",
        "description": "Glucose. Maps to source symbol `Glucose`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "nad",
        "label": "Nad",
        "maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.nad",
        "description": "Nad. Maps to source symbol `NAD`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "nad_bound",
        "label": "Nad Bound",
        "maps_to": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.nad_bound",
        "description": "Nad Bound. Maps to source symbol `NAD_bound`. Units: native SBML value. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Biomodels model2409150001 - Nad Labelling Dynamics Lab",
  "models": [
    {
      "path": "owned/models/physiology_sbml_nad_labelling_dynamics_model2409150001_model",
      "alias": "physiology_sbml_nad_labelling_dynamics_model2409150001_model",
      "parameters": {
        "model_path": "data/MODEL2409150001.xml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_sbml_nad_labelling_dynamics_model2409150001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_sbml_nad_labelling_dynamics_model2409150001_model_state"
      ],
      "from": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.state"
    },
    {
      "to": [
        "visualisation.physiology_sbml_nad_labelling_dynamics_model2409150001_model_summary"
      ],
      "from": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_sbml_nad_labelling_dynamics_model2409150001_model_trajectory"
      ],
      "from": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_sbml_nad_labelling_dynamics_model2409150001_model_species_labels"
      ],
      "from": "physiology_sbml_nad_labelling_dynamics_model2409150001_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for NAD labelling dynamics. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.",
  "schema_version": "2.0"
}

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