BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Aubert2005 - Interaction between astrocytes and neurons on energy metabolism Lab

About lab

Aubert2005 - Interaction between astrocytesand neurons on energy metabolism Enocded non-curated model. Issues: - Confusing equations A.41 and A.42 - Missing values for parameters Vv,0 and dHb,0 This m.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packageaubert2005-interaction-between-astrocytes-and-neurons-on-energy
Created2026-05-15
Updated2026-05-15
biomodels_ebifaithfulmetabolismodesbmltelluriumvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_neuronal_adp",
        "units": "native SBML value",
        "default": 0.0119296850858459,
        "maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.initial_neuronal_adp",
        "description": "Initial condition for neuronal adp. Maps to bundled SBML symbol `ADPn`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_neuronal_amp",
        "units": "native SBML value",
        "default": 0.0000703149141538795,
        "maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.initial_neuronal_amp",
        "description": "Initial condition for neuronal amp. Maps to bundled SBML symbol `AMPn`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_brain_energy_state_3",
        "units": "native SBML value",
        "default": 0.0119296850858464,
        "maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.initial_brain_energy_state_3",
        "description": "Initial condition for brain energy state 3. Maps to bundled SBML symbol `ADPg`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_brain_energy_state_4",
        "units": "native SBML value",
        "default": 0.0000703149141538795,
        "maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.initial_brain_energy_state_4",
        "description": "Initial condition for brain energy state 4. Maps to bundled SBML symbol `AMPg`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_brain_energy_state_5",
        "units": "native SBML value",
        "default": 0.0122222222222222,
        "maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.initial_brain_energy_state_5",
        "description": "Initial condition for brain energy state 5. Maps to bundled SBML symbol `rcn`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "neuronal_adp",
        "maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.neuronal_adp"
      },
      {
        "name": "neuronal_amp",
        "maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.neuronal_amp"
      },
      {
        "name": "brain_energy_state_3",
        "maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.brain_energy_state_3"
      },
      {
        "name": "brain_energy_state_4",
        "maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.brain_energy_state_4"
      },
      {
        "name": "brain_energy_state_5",
        "maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.brain_energy_state_5"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.observable_labels"
      }
    ]
  },
  "title": "Aubert2005 - Interaction between astrocytes and neurons on energy metabolism Lab",
  "models": [
    {
      "path": "owned/models/metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model",
      "alias": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model",
      "parameters": {
        "model_path": "data/MODEL1411210000.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model_observable_values"
      ],
      "from": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model_run_summary"
      ],
      "from": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model_observable_labels"
      ],
      "from": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.observable_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Aubert2005 - Interaction between astrocytesand neurons on energy metabolism Enocded non-curated model. Issues: - Confusing equations A.41 and A.42 - Missing values for parameters Vv,0 and dHb,0 This m.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.