About lab
Aubert2005 - Interaction between astrocytesand neurons on energy metabolism Enocded non-curated model. Issues: - Confusing equations A.41 and A.42 - Missing values for parameters Vv,0 and dHb,0 This m.
Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packageaubert2005-interaction-between-astrocytes-and-neurons-on-energy
Created2026-05-15
Updated2026-05-15
biomodels_ebifaithfulmetabolismodesbmltelluriumvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_neuronal_adp",
"units": "native SBML value",
"default": 0.0119296850858459,
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.initial_neuronal_adp",
"description": "Initial condition for neuronal adp. Maps to bundled SBML symbol `ADPn`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_neuronal_amp",
"units": "native SBML value",
"default": 0.0000703149141538795,
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.initial_neuronal_amp",
"description": "Initial condition for neuronal amp. Maps to bundled SBML symbol `AMPn`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_brain_energy_state_3",
"units": "native SBML value",
"default": 0.0119296850858464,
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.initial_brain_energy_state_3",
"description": "Initial condition for brain energy state 3. Maps to bundled SBML symbol `ADPg`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_brain_energy_state_4",
"units": "native SBML value",
"default": 0.0000703149141538795,
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.initial_brain_energy_state_4",
"description": "Initial condition for brain energy state 4. Maps to bundled SBML symbol `AMPg`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
},
{
"name": "initial_brain_energy_state_5",
"units": "native SBML value",
"default": 0.0122222222222222,
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.initial_brain_energy_state_5",
"description": "Initial condition for brain energy state 5. Maps to bundled SBML symbol `rcn`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
}
],
"outputs": [
{
"name": "neuronal_adp",
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.neuronal_adp"
},
{
"name": "neuronal_amp",
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.neuronal_amp"
},
{
"name": "brain_energy_state_3",
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.brain_energy_state_3"
},
{
"name": "brain_energy_state_4",
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.brain_energy_state_4"
},
{
"name": "brain_energy_state_5",
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.brain_energy_state_5"
},
{
"name": "observable_values",
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.observable_values"
},
{
"name": "run_summary",
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.run_summary"
},
{
"name": "observable_labels",
"maps_to": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.observable_labels"
}
]
},
"title": "Aubert2005 - Interaction between astrocytes and neurons on energy metabolism Lab",
"models": [
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"path": "owned/models/metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model",
"alias": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model",
"parameters": {
"model_path": "data/MODEL1411210000.xml",
"integration_step": 0.1
},
"provenance": {
"owned_path": "owned/models/metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model"
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},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
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],
"from": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.observable_values"
},
{
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],
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},
{
"to": [
"visualisation.metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model_observable_labels"
],
"from": "metabolism_sbml_aubert2005_interaction_between_astrocytes_and_ne_model1411210000_model.observable_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"description": "Aubert2005 - Interaction between astrocytesand neurons on energy metabolism Enocded non-curated model. Issues: - Confusing equations A.41 and A.42 - Missing values for parameters Vv,0 and dHb,0 This m.",
"schema_version": "2.0"
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