About lab
This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/biomodels/). It is copyright (c) 2005-2011 The BioModels.net Team.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
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Metadata
Packagekim2011-oscillator-extendediii-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_rnap",
"label": "Initial Rnap",
"maps_to": "systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model.initial_rnap",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_13`."
},
{
"name": "initial_r_nase_h",
"label": "Initial R Nase H",
"maps_to": "systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model.initial_r_nase_h",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_14`."
},
{
"name": "initial_r_nase_ha3r_i3",
"label": "Initial R Nase Ha3r I3",
"maps_to": "systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model.initial_r_nase_ha3r_i3",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_32`."
},
{
"name": "initial_r_nase_ha2r_i2",
"label": "Initial R Nase Ha2r I2",
"maps_to": "systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model.initial_r_nase_ha2r_i2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_20`."
},
{
"name": "initial_r_nase_ha1r_i1",
"label": "Initial R Nase Ha1r I1",
"maps_to": "systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model.initial_r_nase_ha1r_i1",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_19`."
},
{
"name": "initial_rnapt31_a1s_i1",
"label": "Initial Rnapt31 A1S I1",
"maps_to": "systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model.initial_rnapt31_a1s_i1",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_38`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model.species_labels"
},
{
"name": "rnap",
"maps_to": "systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model.rnap"
},
{
"name": "r_nase_h",
"maps_to": "systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model.r_nase_h"
},
{
"name": "r_nase_ha3r_i3",
"maps_to": "systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model.r_nase_ha3r_i3"
},
{
"name": "r_nase_ha2r_i2",
"maps_to": "systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model.r_nase_ha2r_i2"
},
{
"name": "r_nase_ha1r_i1",
"maps_to": "systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model.r_nase_ha1r_i1"
},
{
"name": "rnapt31_a1s_i1",
"maps_to": "systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model.rnapt31_a1s_i1"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Kim2011 Oscillator Extendediii Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model",
"alias": "systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model_state"
],
"from": "systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model_summary"
],
"from": "systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model_species_labels"
],
"from": "systemsbiology_sbml_kim2011_oscillator_extendediii_model1012090006_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/biomodels/). It is copyright (c) 2005-2011 The BioModels.net Team.",
"schema_version": "2.0"
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