Teusink1998_Glycolysis_TurboDesign Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_hexose_monophosphate",
        "units": "native SBML value",
        "default": 0.1,
        "maps_to": "metabolism_sbml_teusink1998_glycolysis_turbodesign_biomd0000000253_model.initial_hexose_monophosphate",
        "description": "Initial condition for hexose monophosphate. Maps to bundled SBML symbol `HMP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_fructose_1_6_bisphosphate",
        "units": "native SBML value",
        "default": 1,
        "maps_to": "metabolism_sbml_teusink1998_glycolysis_turbodesign_biomd0000000253_model.initial_fructose_1_6_bisphosphate",
        "description": "Initial condition for fructose 1 6 bisphosphate. Maps to bundled SBML symbol `Fru16P2`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_atp",
        "units": "native SBML value",
        "default": 4,
        "maps_to": "metabolism_sbml_teusink1998_glycolysis_turbodesign_biomd0000000253_model.initial_atp",
        "description": "Initial condition for atp. Maps to bundled SBML symbol `ATP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "hexose_monophosphate",
        "maps_to": "metabolism_sbml_teusink1998_glycolysis_turbodesign_biomd0000000253_model.hexose_monophosphate"
      },
      {
        "name": "fructose_1_6_bisphosphate",
        "maps_to": "metabolism_sbml_teusink1998_glycolysis_turbodesign_biomd0000000253_model.fructose_1_6_bisphosphate"
      },
      {
        "name": "atp",
        "maps_to": "metabolism_sbml_teusink1998_glycolysis_turbodesign_biomd0000000253_model.atp"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_teusink1998_glycolysis_turbodesign_biomd0000000253_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_teusink1998_glycolysis_turbodesign_biomd0000000253_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_teusink1998_glycolysis_turbodesign_biomd0000000253_model.observable_labels"
      }
    ]
  },
  "title": "Teusink1998_Glycolysis_TurboDesign Lab",
  "models": [
    {
      "path": "owned/models/metabolism_sbml_teusink1998_glycolysis_turbodesign_biomd0000000253_model",
      "alias": "metabolism_sbml_teusink1998_glycolysis_turbodesign_biomd0000000253_model",
      "parameters": {
        "model_path": "data/BIOMD0000000253.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/metabolism_sbml_teusink1998_glycolysis_turbodesign_biomd0000000253_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_teusink1998_glycolysis_turbodesign_biomd0000000253_model_observable_values"
      ],
      "from": "metabolism_sbml_teusink1998_glycolysis_turbodesign_biomd0000000253_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_teusink1998_glycolysis_turbodesign_biomd0000000253_model_run_summary"
      ],
      "from": "metabolism_sbml_teusink1998_glycolysis_turbodesign_biomd0000000253_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_teusink1998_glycolysis_turbodesign_biomd0000000253_model_observable_labels"
      ],
      "from": "metabolism_sbml_teusink1998_glycolysis_turbodesign_biomd0000000253_model.observable_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "This is the model described in the article: The danger of metabolic pathways with turbo design Teusink B, Walsh MC, van Dam K, Westerhoff HV Trends Biochem. It can be used to explore metabolic flux dynamics and compare pathway behavior across conditions.",
  "schema_version": "2.0"
}