About lab
This is the complete model of CaMKII bistability, model 3. It exhibits bistability in CaMKII activation due to autophosphorylation at the PSD and local saturation of PP1.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagehayer2005-camkii-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_ac_slash_atp",
"label": "Initial Ac Slash ATP",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model.initial_ac_slash_atp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `AC_slash_ATP`."
},
{
"name": "initial_act_ca_mkii_minus_psd",
"label": "Initial Act Ca Mkii Minus Psd",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model.initial_act_ca_mkii_minus_psd",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `actCaMKII_minus_PSD`."
},
{
"name": "initial_nmdar",
"label": "Initial Nmdar",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model.initial_nmdar",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NMDAR`."
},
{
"name": "initial_ca_m_slash_ca_m_minus_psd",
"label": "Initial Ca M Slash Ca M Minus Psd",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model.initial_ca_m_slash_ca_m_minus_psd",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaM_slash_CaM_minus_PSD`."
},
{
"name": "initial_ca_m_slash_ca_m",
"label": "Initial Ca M Slash Ca M",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model.initial_ca_m_slash_ca_m",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaM_slash_CaM`."
},
{
"name": "initial_tot_ca_mkii_cyt",
"label": "Initial Tot Ca Mkii Cyt",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model.initial_tot_ca_mkii_cyt",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `tot_CaMKII_cyt`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model.species_labels"
},
{
"name": "ac_slash_atp",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model.ac_slash_atp"
},
{
"name": "act_ca_mkii_minus_psd",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model.act_ca_mkii_minus_psd"
},
{
"name": "nmdar",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model.nmdar"
},
{
"name": "ca_m_slash_ca_m_minus_psd",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model.ca_m_slash_ca_m_minus_psd"
},
{
"name": "ca_m_slash_ca_m",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model.ca_m_slash_ca_m"
},
{
"name": "tot_ca_mkii_cyt",
"maps_to": "systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model.tot_ca_mkii_cyt"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Hayer2005 Camkii Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model",
"alias": "systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model_state"
],
"from": "systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model_summary"
],
"from": "systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model_species_labels"
],
"from": "systemsbiology_sbml_hayer2005_camkii_model3_model9086953089_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "This is the complete model of CaMKII bistability, model 3. It exhibits bistability in CaMKII activation due to autophosphorylation at the PSD and local saturation of PP1.",
"schema_version": "2.0"
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