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Fujita2010_Akt_Signalling_NGF Lab

About lab

Clean Biosimulant lab for systems signaling model: Fujita2010_Akt_Signalling_NGF. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagefujita2010-akt-signalling-ngf-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebipi3k-aktneurosciencevisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_p_akt_scale_factor_level",
        "label": "P AKT Scale Factor",
        "maps_to": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.initial_p_akt_scale_factor_level",
        "description": "P AKT Scale Factor source parameter. Maps to SBML symbol `pAkt_scaleFactor` and preserves the bundled default."
      },
      {
        "name": "initial_nerve_growth_factor",
        "label": "Initial nerve growth factor",
        "maps_to": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.initial_nerve_growth_factor",
        "description": "Initial level of nerve growth factor. Maps to SBML symbol `NGF`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_pro_trk_a",
        "label": "Initial Pro Trk A",
        "maps_to": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.initial_pro_trk_a",
        "description": "Initial level of Pro Trk A. Maps to SBML symbol `pro_TrkA`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "p_trk_a_akt",
        "label": "P Trk A AKT",
        "maps_to": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.p_trk_a_akt",
        "description": "P Trk A AKT. Maps to SBML symbol `pTrkA_Akt` and is emitted in native SBML units."
      },
      {
        "name": "akt",
        "label": "AKT",
        "maps_to": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.akt",
        "description": "AKT. Maps to SBML symbol `Akt` and is emitted in native SBML units."
      },
      {
        "name": "source_defined_pakt_state",
        "label": "source-defined PAKT state",
        "maps_to": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.source_defined_pakt_state",
        "description": "source-defined PAKT state. Maps to SBML symbol `pAkt` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "pi3k-akt",
    "neuroscience"
  ],
  "title": "Fujita2010_Akt_Signalling_NGF Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model",
      "alias": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model_state"
      ],
      "from": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model_summary"
      ],
      "from": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model_species_labels"
      ],
      "from": "signaling_sbml_fujita2010_akt_signalling_ngf_biomd0000000263_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for systems signaling model: Fujita2010_Akt_Signalling_NGF. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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