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Plant1981 - Mathematical Bursting Nerve Cells Lab

About lab

Source-faithful physiology lab for Plant, 1981. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packageplant1981-mathematical-bursting-nerve-cells-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_plant_1981_plant1981_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millivolt"
        ]
      },
      {
        "name": "initial_c_concentration",
        "label": "Initial C Concentration",
        "maps_to": "physiology_cellml_plant_1981_plant1981_model.initial_c_concentration",
        "description": "Initial value for C Concentration. Maps to source symbol `c`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millimolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_plant_1981_plant1981_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_plant_1981_plant1981_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_plant_1981_plant1981_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_plant_1981_plant1981_model.variable_labels"
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_plant_1981_plant1981_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "potassium_conductance",
        "label": "Potassium Conductance",
        "maps_to": "physiology_cellml_plant_1981_plant1981_model.potassium_conductance",
        "description": "Potassium Conductance. Maps to source symbol `g_K`. Units: milliS_per_microF. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "c_concentration",
        "label": "C Concentration",
        "maps_to": "physiology_cellml_plant_1981_plant1981_model.c_concentration",
        "description": "C Concentration. Maps to source symbol `c`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "leak_conductance",
        "label": "Leak Conductance",
        "maps_to": "physiology_cellml_plant_1981_plant1981_model.leak_conductance",
        "description": "Leak Conductance. Maps to source symbol `g_L`. Units: milliS_per_microF. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "membrane_kp",
        "label": "Membrane Kp",
        "maps_to": "physiology_cellml_plant_1981_plant1981_model.membrane_kp",
        "description": "Membrane Kp. Maps to source symbol `Kp`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "membrane_vs",
        "label": "Membrane Vs",
        "maps_to": "physiology_cellml_plant_1981_plant1981_model.membrane_vs",
        "description": "Membrane Vs. Maps to source symbol `Vs`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Plant1981 - Mathematical Bursting Nerve Cells Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_plant_1981_plant1981_model",
      "alias": "physiology_cellml_plant_1981_plant1981_model",
      "parameters": {
        "model_path": "data/plant_1981.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_plant_1981_plant1981_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_plant_1981_plant1981_model_state"
      ],
      "from": "physiology_cellml_plant_1981_plant1981_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_plant_1981_plant1981_model_summary"
      ],
      "from": "physiology_cellml_plant_1981_plant1981_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_plant_1981_plant1981_model_trajectory"
      ],
      "from": "physiology_cellml_plant_1981_plant1981_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_plant_1981_plant1981_model_variable_labels"
      ],
      "from": "physiology_cellml_plant_1981_plant1981_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Plant, 1981. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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