Neumann1998 - Mathematical Hepatitis C Viral Dynamics Vivo Antiviral Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_infected_cells_i",
        "label": "Initial Infected Cells I",
        "maps_to": "physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model.initial_infected_cells_i",
        "description": "Initial value for Infected Cells I. Maps to source symbol `I`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_target_cells_t",
        "label": "Initial Target Cells T",
        "maps_to": "physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model.initial_target_cells_t",
        "description": "Initial value for Target Cells T. Maps to source symbol `T`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model.variable_labels"
      },
      {
        "name": "infected_cells_i",
        "label": "Infected Cells I",
        "maps_to": "physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model.infected_cells_i",
        "description": "Infected Cells I. Maps to source symbol `I`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "target_cells_t",
        "label": "Target Cells T",
        "maps_to": "physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model.target_cells_t",
        "description": "Target Cells T. Maps to source symbol `T`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "viral_quantity_v",
        "label": "Viral Quantity V (source V)",
        "maps_to": "physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model.viral_quantity_v",
        "description": "Viral Quantity V (source V). Maps to source symbol `V`. Units: dimensionless. Naming evidence: viral/infection context supports a conservative viral quantity label."
      },
      {
        "name": "beta",
        "label": "Beta",
        "maps_to": "physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model.beta",
        "description": "Beta. Maps to source symbol `beta`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "delta",
        "label": "Delta",
        "maps_to": "physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model.delta",
        "description": "Delta. Maps to source symbol `delta`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "epsilon",
        "label": "Epsilon",
        "maps_to": "physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model.epsilon",
        "description": "Epsilon. Maps to source symbol `epsilon`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Neumann1998 - Mathematical Hepatitis C Viral Dynamics Vivo Antiviral Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model",
      "alias": "physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model",
      "parameters": {
        "model_path": "data/neumann_lam_dahari_gretch_wiley_layden_perelson_1998.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model_state"
      ],
      "from": "physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model_summary"
      ],
      "from": "physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model_trajectory"
      ],
      "from": "physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model_variable_labels"
      ],
      "from": "physiology_cellml_neumann_lam_dahari_gretch_wiley_layden_perelson_neumannlamdaharigretchwileylaydenperelson1998_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Neumann, Lam, Dahari, Gretch, Wiley, Layden, Perelson, 1998. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}