About lab
Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
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Completed0
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Metadata
Packageshin2016-unveiling-hidden-dynamics-of-hippo-sign
Created2026-05-16
Updated2026-06-13
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimapkras-erkpi3k-akthippovisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_a_egfr_level",
"label": "A EGFR",
"maps_to": "signaling_sbml_shin2016_unveiling_hidden_dynamics_of_hippo_sign_biomd0000000832_model.initial_a_egfr_level",
"description": "A EGFR source parameter. Maps to SBML symbol `aEGFR` and preserves the bundled default."
}
],
"outputs": [
{
"name": "akt",
"label": "AKT",
"maps_to": "signaling_sbml_shin2016_unveiling_hidden_dynamics_of_hippo_sign_biomd0000000832_model.akt",
"description": "AKT. Maps to SBML symbol `Akt` and is emitted in native SBML units."
},
{
"name": "rassf1a",
"label": "RASSF1A",
"maps_to": "signaling_sbml_shin2016_unveiling_hidden_dynamics_of_hippo_sign_biomd0000000832_model.rassf1a",
"description": "RASSF1A. Maps to SBML symbol `RASSF1A` and is emitted in native SBML units."
},
{
"name": "a_mst2u_rassf1a",
"label": "A Mst2u RASSF1A",
"maps_to": "signaling_sbml_shin2016_unveiling_hidden_dynamics_of_hippo_sign_biomd0000000832_model.a_mst2u_rassf1a",
"description": "A Mst2u RASSF1A. Maps to SBML symbol `aMST2uRASSF1A` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_shin2016_unveiling_hidden_dynamics_of_hippo_sign_biomd0000000832_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_shin2016_unveiling_hidden_dynamics_of_hippo_sign_biomd0000000832_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_shin2016_unveiling_hidden_dynamics_of_hippo_sign_biomd0000000832_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"mapk",
"ras-erk",
"pi3k-akt",
"hippo"
],
"title": "Shin2016 - Unveiling Hidden Dynamics of Hippo Signalling Lab",
"models": [
{
"path": "models/core",
"alias": "signaling_sbml_shin2016_unveiling_hidden_dynamics_of_hippo_sign_biomd0000000832_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_shin2016_unveiling_hidden_dynamics_of_hippo_sign_biomd0000000832_model_state"
],
"from": "signaling_sbml_shin2016_unveiling_hidden_dynamics_of_hippo_sign_biomd0000000832_model.state"
},
{
"to": [
"visualisation.signaling_sbml_shin2016_unveiling_hidden_dynamics_of_hippo_sign_biomd0000000832_model_summary"
],
"from": "signaling_sbml_shin2016_unveiling_hidden_dynamics_of_hippo_sign_biomd0000000832_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_shin2016_unveiling_hidden_dynamics_of_hippo_sign_biomd0000000832_model_species_labels"
],
"from": "signaling_sbml_shin2016_unveiling_hidden_dynamics_of_hippo_sign_biomd0000000832_model.species_labels"
}
],
"package": "shin2016-unveiling-hidden-dynamics-of-hippo-sign",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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