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Devries2000 - Enhancement Emergent Bursting Pancreatic Beta Cells Lab

About lab

Source-faithful physiology lab for Devries, Sherman, 2000. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagedevries2000-enhancement-emergent-bursting-pancreatic-beta-cells
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_devries_sherman_2000_devriessherman2000_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millivolt"
        ]
      },
      {
        "name": "initial_potassium_n_gate",
        "label": "Initial Potassium N Gate",
        "maps_to": "physiology_cellml_devries_sherman_2000_devriessherman2000_model.initial_potassium_n_gate",
        "description": "Initial value for Potassium N Gate. Maps to source symbol `n`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_devries_sherman_2000_devriessherman2000_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_devries_sherman_2000_devriessherman2000_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_devries_sherman_2000_devriessherman2000_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_devries_sherman_2000_devriessherman2000_model.variable_labels"
      },
      {
        "name": "membrane_voltage_v_m",
        "label": "Membrane Voltage V M",
        "maps_to": "physiology_cellml_devries_sherman_2000_devriessherman2000_model.membrane_voltage_v_m",
        "description": "Membrane Voltage V M. Maps to source symbol `V_m`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "potassium_conductance",
        "label": "Potassium Conductance",
        "maps_to": "physiology_cellml_devries_sherman_2000_devriessherman2000_model.potassium_conductance",
        "description": "Potassium Conductance. Maps to source symbol `g_K_ATP`. Units: nanoS. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "potassium_current",
        "label": "Potassium Current",
        "maps_to": "physiology_cellml_devries_sherman_2000_devriessherman2000_model.potassium_current",
        "description": "Potassium Current. Maps to source symbol `i_K_ATP`. Units: picoA. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "atp_sensitive_potassium_current_p",
        "label": "ATP Sensitive Potassium Current P",
        "maps_to": "physiology_cellml_devries_sherman_2000_devriessherman2000_model.atp_sensitive_potassium_current_p",
        "description": "ATP Sensitive Potassium Current P. Maps to source symbol `p`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_devries_sherman_2000_devriessherman2000_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "potassium_n_gate",
        "label": "Potassium N Gate",
        "maps_to": "physiology_cellml_devries_sherman_2000_devriessherman2000_model.potassium_n_gate",
        "description": "Potassium N Gate. Maps to source symbol `n`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Devries2000 - Enhancement Emergent Bursting Pancreatic Beta Cells Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_devries_sherman_2000_devriessherman2000_model",
      "alias": "physiology_cellml_devries_sherman_2000_devriessherman2000_model",
      "parameters": {
        "model_path": "data/devries_sherman_2000.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_devries_sherman_2000_devriessherman2000_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_devries_sherman_2000_devriessherman2000_model_state"
      ],
      "from": "physiology_cellml_devries_sherman_2000_devriessherman2000_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_devries_sherman_2000_devriessherman2000_model_summary"
      ],
      "from": "physiology_cellml_devries_sherman_2000_devriessherman2000_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_devries_sherman_2000_devriessherman2000_model_trajectory"
      ],
      "from": "physiology_cellml_devries_sherman_2000_devriessherman2000_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_devries_sherman_2000_devriessherman2000_model_variable_labels"
      ],
      "from": "physiology_cellml_devries_sherman_2000_devriessherman2000_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Devries, Sherman, 2000. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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