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Panteleev2010 Blood Coagulation Full Lab

About lab

Panteleev2010 Blood Coagulation Full

This Biosimulant lab wraps Panteleev2010 Blood Coagulation Full as a runnable systems biology model with a companion visualization module. Full and reduced mathematical model of blood coagulation focusing on fibrin formation and the response to varied TF and V. It can be used to explore the configured dynamics and compare scenario outcomes across configurations.

What You'll See

The lab asks: Which source-defined system states dominate this SBML model trajectory? Source model: Panteleev2010 - Blood Coagulation: Full Model. It runs for 1.0 time units with a communication step of 0.1. The run uses the model defaults declared by the curated SBML wrapper. The generated visualizations focus on ProteinS-inhibitor, ProteinC-Inhibitor, alpha1-antitrypsin, fibrinogen, AT-III, and alpha2-macroglobulin, combining trajectory, endpoint-comparison, and summary-table views from one completed dark-mode run.

In this captured run, fibrinogen moved from 7600.0 to 7596.0 across 1.0 simulation windows.

Output Visualizations

Panteleev2010 Blood Coagulation Full - run interpretation

Summary table for Panteleev2010 Blood Coagulation Full, reporting the scientific question, observed answer, dominant module, and caveat.

Panteleev2010 Blood Coagulation Full - timeseries visualization

Trajectories of fibrinogen, AT-III, ProteinS-inhibitor, ProteinC-Inhibitor, alpha1-antitrypsin, and alpha2-macroglobulin across the 1.0 simulation. In this run fibrinogen fell from 7600.0 to 7596.0 — the largest movements among the focused observables.

Panteleev2010 Blood Coagulation Full - excursions bar

Largest-excursion ranking of the focused observables — the absolute movement magnitude during the run. Top 2: fibrinogen = 4.033, AT-III = 0.00165.

Panteleev2010 Blood Coagulation Full - endpoint snapshot bar

Endpoint snapshot of the focused observables — final values from the captured run. Top 3 by value: alpha1-antitrypsin = 4e+04, fibrinogen = 7596.0, AT-III = 3400.0, with 3 more observables below.

Panteleev2010 Blood Coagulation Full - visualization

Visualization card from the Panteleev2010 Blood Coagulation Full dark-mode run.

Model Context

  • Core model: models/core
  • Visualization model: models/visualisation
  • Standard: other
  • Upstream source: biomodels_ebi:BIOMD0000000740
  • License: CC0

Inputs

InputMaps ToDefaultNotes
Initial Protein S Inhibitorsystemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.initial_protein_s_inhibitorSource state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol ProteinS_inhibitor.
Initial Protein C Inhibitorsystemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.initial_protein_c_inhibitorSource state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol ProteinC_Inhibitor.
Initial Alpha1 Antitrypsinsystemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.initial_alpha1_antitrypsinSource state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol alpha1_antitrypsin.
Initial Fibrinogensystemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.initial_fibrinogenSource state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol fibrinogen.
Initial At Iiisystemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.initial_at_iiiSource state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol AT_III.
Initial Alpha2 Macroglobulinsystemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.initial_alpha2_macroglobulinSource state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol alpha2_macroglobulin.

Outputs

OutputMaps ToRole
statesystemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.stateAvailable to the visualization model and downstream workflows.
summarysystemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.summaryAvailable to the visualization model and downstream workflows.
species_labelssystemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.species_labelsAvailable to the visualization model and downstream workflows.
protein_s_inhibitorsystemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.protein_s_inhibitorAvailable to the visualization model and downstream workflows.
protein_c_inhibitorsystemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.protein_c_inhibitorAvailable to the visualization model and downstream workflows.
alpha1_antitrypsinsystemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.alpha1_antitrypsinAvailable to the visualization model and downstream workflows.
fibrinogensystemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.fibrinogenAvailable to the visualization model and downstream workflows.
at_iiisystemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.at_iiiAvailable to the visualization model and downstream workflows.
alpha2_macroglobulinsystemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.alpha2_macroglobulinAvailable to the visualization model and downstream workflows.

Runtime

  • Duration: 1.0
  • Communication step: 0.1

Running Locally

biosimulant labs serve

Full and reduced mathematical model of blood coagulation focusing on fibrin formation and the response to varied TF and V. It can be used to explore systemsbiology panteleev2010 blood coagulation full BioModels0000000740 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagepanteleev2010-blood-coagulation-full-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_protein_s_inhibitor",
        "label": "Initial Protein S Inhibitor",
        "maps_to": "systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.initial_protein_s_inhibitor",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ProteinS_inhibitor`."
      },
      {
        "name": "initial_protein_c_inhibitor",
        "label": "Initial Protein C Inhibitor",
        "maps_to": "systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.initial_protein_c_inhibitor",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ProteinC_Inhibitor`."
      },
      {
        "name": "initial_alpha1_antitrypsin",
        "label": "Initial Alpha1 Antitrypsin",
        "maps_to": "systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.initial_alpha1_antitrypsin",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `alpha1_antitrypsin`."
      },
      {
        "name": "initial_fibrinogen",
        "label": "Initial Fibrinogen",
        "maps_to": "systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.initial_fibrinogen",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `fibrinogen`."
      },
      {
        "name": "initial_at_iii",
        "label": "Initial At Iii",
        "maps_to": "systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.initial_at_iii",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `AT_III`."
      },
      {
        "name": "initial_alpha2_macroglobulin",
        "label": "Initial Alpha2 Macroglobulin",
        "maps_to": "systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.initial_alpha2_macroglobulin",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `alpha2_macroglobulin`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.species_labels"
      },
      {
        "name": "protein_s_inhibitor",
        "maps_to": "systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.protein_s_inhibitor"
      },
      {
        "name": "protein_c_inhibitor",
        "maps_to": "systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.protein_c_inhibitor"
      },
      {
        "name": "alpha1_antitrypsin",
        "maps_to": "systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.alpha1_antitrypsin"
      },
      {
        "name": "fibrinogen",
        "maps_to": "systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.fibrinogen"
      },
      {
        "name": "at_iii",
        "maps_to": "systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.at_iii"
      },
      {
        "name": "alpha2_macroglobulin",
        "maps_to": "systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.alpha2_macroglobulin"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Panteleev2010 Blood Coagulation Full Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model",
      "alias": "systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model_state"
      ],
      "from": "systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model_summary"
      ],
      "from": "systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model_species_labels"
      ],
      "from": "systemsbiology_sbml_panteleev2010_blood_coagulation_full_model_biomd0000000740_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Full and reduced mathematical model of blood coagulation focusing on fibrin formation and the response to varied TF and V. It can be used to explore systemsbiology panteleev2010 blood coagulation full BioModels0000000740 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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