About lab
Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageschilling2009-erk-distributive-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimapkras-erkvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_jak2",
"label": "Initial JAK2",
"maps_to": "signaling_sbml_schilling2009_erk_distributive_biomd0000000270_model.initial_jak2",
"description": "Initial level of JAK2. Maps to SBML symbol `JAK2`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "source_defined_erk1_state",
"label": "Source Defined ERK1 State",
"maps_to": "signaling_sbml_schilling2009_erk_distributive_biomd0000000270_model.source_defined_erk1_state",
"description": "Source Defined ERK1 State. Maps to SBML symbol `ERK1` and is emitted in native SBML units."
},
{
"name": "source_defined_erk2_state",
"label": "Source Defined ERK2 State",
"maps_to": "signaling_sbml_schilling2009_erk_distributive_biomd0000000270_model.source_defined_erk2_state",
"description": "Source Defined ERK2 State. Maps to SBML symbol `ERK2` and is emitted in native SBML units."
},
{
"name": "pperk1",
"label": "PPERK1",
"maps_to": "signaling_sbml_schilling2009_erk_distributive_biomd0000000270_model.pperk1",
"description": "PPERK1. Maps to SBML symbol `ppERK1` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_schilling2009_erk_distributive_biomd0000000270_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_schilling2009_erk_distributive_biomd0000000270_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_schilling2009_erk_distributive_biomd0000000270_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"mapk",
"ras-erk"
],
"title": "Schilling2009 - ERK distributive Lab",
"models": [
{
"path": "owned/models/signaling_sbml_schilling2009_erk_distributive_biomd0000000270_model",
"alias": "signaling_sbml_schilling2009_erk_distributive_biomd0000000270_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_schilling2009_erk_distributive_biomd0000000270_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_schilling2009_erk_distributive_biomd0000000270_model_state"
],
"from": "signaling_sbml_schilling2009_erk_distributive_biomd0000000270_model.state"
},
{
"to": [
"visualisation.signaling_sbml_schilling2009_erk_distributive_biomd0000000270_model_summary"
],
"from": "signaling_sbml_schilling2009_erk_distributive_biomd0000000270_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_schilling2009_erk_distributive_biomd0000000270_model_species_labels"
],
"from": "signaling_sbml_schilling2009_erk_distributive_biomd0000000270_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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