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Carcione2020 - Deterministic SEIR simulation of a COVID-19 outbreak Lab

About lab

Single-model lab wrapper for Carcione2020 - Deterministic SEIR simulation of a COVID-19 outbreak. An epidemic disease caused by a new coronavirus has spread in Northern Italy with a strong contagion rate. It can be used to explore transmission dynamics and compare scenario outcomes across conditions.

Runtime

Duration10
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagecarcione2020-deterministic-seir-simulation-of-a-covid-19-outbrea
Created2026-05-15
Updated2026-05-15
biomodels_ebicuratedepidemiologyfaithfulsbmltelluriumvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "transmission_rate",
        "label": "Transmission Rate",
        "maps_to": "epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model.transmission_rate"
      },
      {
        "name": "recovery_rate",
        "label": "Recovery Rate",
        "maps_to": "epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model.recovery_rate"
      },
      {
        "name": "incubation_rate",
        "label": "Incubation Rate",
        "maps_to": "epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model.incubation_rate"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Model state",
        "maps_to": "epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Species labels",
        "maps_to": "epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model.species_labels"
      },
      {
        "name": "exposed",
        "label": "Exposed",
        "maps_to": "epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model.exposed"
      },
      {
        "name": "infected",
        "label": "Infected",
        "maps_to": "epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model.infected"
      },
      {
        "name": "deceased",
        "label": "Deceased",
        "maps_to": "epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model.deceased"
      },
      {
        "name": "susceptible",
        "label": "Susceptible",
        "maps_to": "epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model.susceptible"
      },
      {
        "name": "recovered",
        "label": "Recovered",
        "maps_to": "epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model.recovered"
      },
      {
        "name": "total_population",
        "label": "Total population",
        "maps_to": "epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model.total_population"
      }
    ]
  },
  "title": "Carcione2020 - Deterministic SEIR simulation of a COVID-19 outbreak Lab",
  "models": [
    {
      "path": "owned/models/epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model",
      "alias": "epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model",
      "parameters": {
        "model_path": "data/BIOMD0000000974.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model_state"
      ],
      "from": "epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model.state"
    },
    {
      "to": [
        "visualisation.epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model_summary"
      ],
      "from": "epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model.summary"
    },
    {
      "to": [
        "visualisation.epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model_species_labels"
      ],
      "from": "epidemiology_sbml_carcione2020_deterministic_seir_simulation_of_a_biomd0000000974_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Single-model lab wrapper for Carcione2020 - Deterministic SEIR simulation of a COVID-19 outbreak. An epidemic disease caused by a new coronavirus has spread in Northern Italy with a strong contagion rate. It can be used to explore transmission dynamics and compare scenario outcomes across conditions.",
  "schema_version": "2.0"
}

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