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Tomida2003 Calcium Oscillatory Induced Translocation Of Nuclear Facto Lab

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Tomida2003 - NFAT functions CalciumOscillation This model is described in the article: NFAT functions as a working memory of Ca2+ signals in decoding Ca2+ oscillation. It can be used to explore systemsbiology tomida2003 calcium oscillatory induced transloca dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagetomida2003-calcium-oscillatory-induced-translocation-of-nuclear
Created2026-05-17
Updated2026-05-17
immunologyphysiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_stimulus",
        "label": "Initial Stimulus",
        "maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.initial_stimulus",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `stimulus`."
      },
      {
        "name": "initial_nfat_phosphorylated",
        "label": "Initial Nfat Phosphorylated",
        "maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.initial_nfat_phosphorylated",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NFAT_phosphorylated`."
      },
      {
        "name": "initial_nfat_transported",
        "label": "Initial Nfat Transported",
        "maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.initial_nfat_transported",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NFAT_transported`."
      },
      {
        "name": "initial_nfat_dephosphorylated",
        "label": "Initial Nfat Dephosphorylated",
        "maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.initial_nfat_dephosphorylated",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NFAT_dephosphorylated`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.species_labels"
      },
      {
        "name": "stimulus",
        "maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.stimulus"
      },
      {
        "name": "nfat_phosphorylated",
        "maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.nfat_phosphorylated"
      },
      {
        "name": "nfat_transported",
        "maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.nfat_transported"
      },
      {
        "name": "nfat_dephosphorylated",
        "maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.nfat_dephosphorylated"
      }
    ]
  },
  "tags": [
    "immunology",
    "physiology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Tomida2003 Calcium Oscillatory Induced Translocation Of Nuclear Facto Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model",
      "alias": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model_state"
      ],
      "from": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model_summary"
      ],
      "from": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model_species_labels"
      ],
      "from": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Tomida2003 - NFAT functions CalciumOscillation This model is described in the article: NFAT functions as a working memory of Ca2+ signals in decoding Ca2+ oscillation. It can be used to explore systemsbiology tomida2003 calcium oscillatory induced transloca dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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