About lab
Tomida2003 - NFAT functions CalciumOscillation This model is described in the article: NFAT functions as a working memory of Ca2+ signals in decoding Ca2+ oscillation. It can be used to explore systemsbiology tomida2003 calcium oscillatory induced transloca dynamics and compare simulation behavior across conditions.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagetomida2003-calcium-oscillatory-induced-translocation-of-nuclear
Created2026-05-17
Updated2026-05-17
immunologyphysiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_stimulus",
"label": "Initial Stimulus",
"maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.initial_stimulus",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `stimulus`."
},
{
"name": "initial_nfat_phosphorylated",
"label": "Initial Nfat Phosphorylated",
"maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.initial_nfat_phosphorylated",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NFAT_phosphorylated`."
},
{
"name": "initial_nfat_transported",
"label": "Initial Nfat Transported",
"maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.initial_nfat_transported",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NFAT_transported`."
},
{
"name": "initial_nfat_dephosphorylated",
"label": "Initial Nfat Dephosphorylated",
"maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.initial_nfat_dephosphorylated",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `NFAT_dephosphorylated`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.species_labels"
},
{
"name": "stimulus",
"maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.stimulus"
},
{
"name": "nfat_phosphorylated",
"maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.nfat_phosphorylated"
},
{
"name": "nfat_transported",
"maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.nfat_transported"
},
{
"name": "nfat_dephosphorylated",
"maps_to": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.nfat_dephosphorylated"
}
]
},
"tags": [
"immunology",
"physiology",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Tomida2003 Calcium Oscillatory Induced Translocation Of Nuclear Facto Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model",
"alias": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model_state"
],
"from": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model_summary"
],
"from": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model_species_labels"
],
"from": "systemsbiology_sbml_tomida2003_calcium_oscillatory_induced_transloca_biomd0000000678_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Tomida2003 - NFAT functions CalciumOscillation This model is described in the article: NFAT functions as a working memory of Ca2+ signals in decoding Ca2+ oscillation. It can be used to explore systemsbiology tomida2003 calcium oscillatory induced transloca dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
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