BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Bindschadler2001 Coupled Ca Oscillators Lab

About lab

The model reproduces the same amplitude antiphase calcium oscillations of coupled cells depicted in Figure 5B of the publication. This model was successfully tested on Jarnac and MathSBML.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebindschadler2001-coupled-ca-oscillators-lab
Created2026-05-17
Updated2026-05-17
generegulationphysiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_receptor_fraction_cell1",
        "label": "Initial Receptor Fraction Cell1",
        "maps_to": "systemsbiology_sbml_bindschadler2001_coupled_ca_oscillators_biomd0000000058_model.initial_receptor_fraction_cell1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `h1`."
      },
      {
        "name": "initial_calcium_ion_cell1",
        "label": "Initial Calcium Ion Cell1",
        "maps_to": "systemsbiology_sbml_bindschadler2001_coupled_ca_oscillators_biomd0000000058_model.initial_calcium_ion_cell1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `c1`."
      },
      {
        "name": "initial_receptor_fraction_cell2",
        "label": "Initial Receptor Fraction Cell2",
        "maps_to": "systemsbiology_sbml_bindschadler2001_coupled_ca_oscillators_biomd0000000058_model.initial_receptor_fraction_cell2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `h2`."
      },
      {
        "name": "initial_calcium_ion_cell2",
        "label": "Initial Calcium Ion Cell2",
        "maps_to": "systemsbiology_sbml_bindschadler2001_coupled_ca_oscillators_biomd0000000058_model.initial_calcium_ion_cell2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `c2`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_bindschadler2001_coupled_ca_oscillators_biomd0000000058_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_bindschadler2001_coupled_ca_oscillators_biomd0000000058_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_bindschadler2001_coupled_ca_oscillators_biomd0000000058_model.species_labels"
      },
      {
        "name": "receptor_fraction_cell1",
        "maps_to": "systemsbiology_sbml_bindschadler2001_coupled_ca_oscillators_biomd0000000058_model.receptor_fraction_cell1"
      },
      {
        "name": "calcium_ion_cell1",
        "maps_to": "systemsbiology_sbml_bindschadler2001_coupled_ca_oscillators_biomd0000000058_model.calcium_ion_cell1"
      },
      {
        "name": "receptor_fraction_cell2",
        "maps_to": "systemsbiology_sbml_bindschadler2001_coupled_ca_oscillators_biomd0000000058_model.receptor_fraction_cell2"
      },
      {
        "name": "calcium_ion_cell2",
        "maps_to": "systemsbiology_sbml_bindschadler2001_coupled_ca_oscillators_biomd0000000058_model.calcium_ion_cell2"
      }
    ]
  },
  "tags": [
    "generegulation",
    "physiology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Bindschadler2001 Coupled Ca Oscillators Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_bindschadler2001_coupled_ca_oscillators_biomd0000000058_model",
      "alias": "systemsbiology_sbml_bindschadler2001_coupled_ca_oscillators_biomd0000000058_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_bindschadler2001_coupled_ca_oscillators_biomd0000000058_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_bindschadler2001_coupled_ca_oscillators_biomd0000000058_model_state"
      ],
      "from": "systemsbiology_sbml_bindschadler2001_coupled_ca_oscillators_biomd0000000058_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bindschadler2001_coupled_ca_oscillators_biomd0000000058_model_summary"
      ],
      "from": "systemsbiology_sbml_bindschadler2001_coupled_ca_oscillators_biomd0000000058_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bindschadler2001_coupled_ca_oscillators_biomd0000000058_model_species_labels"
      ],
      "from": "systemsbiology_sbml_bindschadler2001_coupled_ca_oscillators_biomd0000000058_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "The model reproduces the same amplitude antiphase calcium oscillations of coupled cells depicted in Figure 5B of the publication. This model was successfully tested on Jarnac and MathSBML.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.