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Tyson2003_Activator_Inhibitor Lab

About lab

Clean Biosimulant lab for systems signaling model: Tyson2003_Activator_Inhibitor. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagetyson2003-activator-inhibitor-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebipharmacologyvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_source_defined_e_state",
        "label": "Initial source-defined E state",
        "maps_to": "signaling_sbml_tyson2003_activator_inhibitor_biomd0000000306_model.initial_source_defined_e_state",
        "description": "Initial level of source-defined E state. Maps to SBML symbol `E`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_source_defined_ep_state",
        "label": "Initial source-defined EP state",
        "maps_to": "signaling_sbml_tyson2003_activator_inhibitor_biomd0000000306_model.initial_source_defined_ep_state",
        "description": "Initial level of source-defined EP state. Maps to SBML symbol `Ep`; exposed as a traceable initial-condition perturbation."
      },
      {
        "name": "initial_source_defined_s_state",
        "label": "Initial source-defined S state",
        "maps_to": "signaling_sbml_tyson2003_activator_inhibitor_biomd0000000306_model.initial_source_defined_s_state",
        "description": "Initial level of source-defined S state. Maps to SBML symbol `S`; exposed as a traceable initial-condition perturbation."
      }
    ],
    "outputs": [
      {
        "name": "source_defined_r_state",
        "label": "Source Defined R State",
        "maps_to": "signaling_sbml_tyson2003_activator_inhibitor_biomd0000000306_model.source_defined_r_state",
        "description": "Source Defined R State. Maps to SBML symbol `R` and is emitted in native SBML units."
      },
      {
        "name": "response_node_x",
        "label": "Response Node X",
        "maps_to": "signaling_sbml_tyson2003_activator_inhibitor_biomd0000000306_model.response_node_x",
        "description": "Response Node X. Maps to SBML symbol `X` and is emitted in native SBML units."
      },
      {
        "name": "source_defined_s_state",
        "label": "Source Defined S State",
        "maps_to": "signaling_sbml_tyson2003_activator_inhibitor_biomd0000000306_model.source_defined_s_state",
        "description": "Source Defined S State. Maps to SBML symbol `S` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_tyson2003_activator_inhibitor_biomd0000000306_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_tyson2003_activator_inhibitor_biomd0000000306_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_tyson2003_activator_inhibitor_biomd0000000306_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "pharmacology"
  ],
  "title": "Tyson2003_Activator_Inhibitor Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_tyson2003_activator_inhibitor_biomd0000000306_model",
      "alias": "signaling_sbml_tyson2003_activator_inhibitor_biomd0000000306_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_tyson2003_activator_inhibitor_biomd0000000306_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_tyson2003_activator_inhibitor_biomd0000000306_model_state"
      ],
      "from": "signaling_sbml_tyson2003_activator_inhibitor_biomd0000000306_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_tyson2003_activator_inhibitor_biomd0000000306_model_summary"
      ],
      "from": "signaling_sbml_tyson2003_activator_inhibitor_biomd0000000306_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_tyson2003_activator_inhibitor_biomd0000000306_model_species_labels"
      ],
      "from": "signaling_sbml_tyson2003_activator_inhibitor_biomd0000000306_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for systems signaling model: Tyson2003_Activator_Inhibitor. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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