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Physiome 1b5 - Cell Viability Tissue Exposed Thermal Ablation Lab

About lab

Source-faithful physiology lab for Cell viability models for tissue exposed to thermal ablation temperatures.. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagephysiome-1b5-cell-viability-tissue-exposed-thermal-ablation-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_rate_kinetics_c",
        "label": "Initial Rate Kinetics C",
        "maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.initial_rate_kinetics_c",
        "description": "Initial value for Rate Kinetics C. Maps to source symbol `C`. Units: conc. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "conc"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.variable_labels"
      },
      {
        "name": "rate_kinetics_c",
        "label": "Rate Kinetics C",
        "maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.rate_kinetics_c",
        "description": "Rate Kinetics C. Maps to source symbol `C`. Units: conc. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "rate_kinetics_a",
        "label": "Rate Kinetics A",
        "maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.rate_kinetics_a",
        "description": "Rate Kinetics A. Maps to source symbol `A`. Units: per_sec. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "rate_kinetics_e",
        "label": "Rate Kinetics E",
        "maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.rate_kinetics_e",
        "description": "Rate Kinetics E. Maps to source symbol `E`. Units: J_per_mol. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "rate_kinetics_k",
        "label": "Rate Kinetics K",
        "maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.rate_kinetics_k",
        "description": "Rate Kinetics K. Maps to source symbol `k`. Units: per_sec. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "rate_kinetics_r",
        "label": "Rate Kinetics R",
        "maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.rate_kinetics_r",
        "description": "Rate Kinetics R. Maps to source symbol `R`. Units: J_per_mol_per_K. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "rate_kinetics_t",
        "label": "Rate Kinetics T",
        "maps_to": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.rate_kinetics_t",
        "description": "Rate Kinetics T. Maps to source symbol `T`. Units: kelvin. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Physiome 1b5 - Cell Viability Tissue Exposed Thermal Ablation Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model",
      "alias": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model",
      "parameters": {
        "model_path": "data/arrhenius-cell-death.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model_state"
      ],
      "from": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model_summary"
      ],
      "from": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model_trajectory"
      ],
      "from": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model_variable_labels"
      ],
      "from": "physiology_cellml_cell_viability_models_for_tissue_exposed_to_ther_1b5_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Cell viability models for tissue exposed to thermal ablation temperatures.. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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