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Garny2003 - Mathematical Action Potentials Periphery Sinoatrial Node Lab

About lab

Source-faithful physiology lab for Garny, Kohl, Hunter, Boyett, Noble, 2003. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagegarny2003-mathematical-action-potentials-periphery-sinoatrial-no
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millivolt"
        ]
      },
      {
        "name": "initial_sodium_current_h_gate_h1",
        "label": "Initial Sodium Current H Gate H1",
        "maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.initial_sodium_current_h_gate_h1",
        "description": "Initial value for Sodium Current H Gate H1. Maps to source symbol `h1`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.variable_labels"
      },
      {
        "name": "sodium_current",
        "label": "Sodium Current",
        "maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.sodium_current",
        "description": "Sodium Current. Maps to source symbol `i_p`. Units: nanoA. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current_i_p_max",
        "label": "Sodium Current I P Max",
        "maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.sodium_current_i_p_max",
        "description": "Sodium Current I P Max. Maps to source symbol `i_p_max`. Units: nanoA. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current_i_p_max_centre_0_d",
        "label": "Sodium Current I P Max Centre 0 D",
        "maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.sodium_current_i_p_max_centre_0_d",
        "description": "Sodium Current I P Max Centre 0 D. Maps to source symbol `i_p_max_Centre_0DCapable`. Units: nanoA. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current_i_p_max_centre_1_d",
        "label": "Sodium Current I P Max Centre 1 D",
        "maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.sodium_current_i_p_max_centre_1_d",
        "description": "Sodium Current I P Max Centre 1 D. Maps to source symbol `i_p_max_Centre_1DCapable`. Units: nanoA. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current_i_p_max_centre_pub",
        "label": "Sodium Current I P Max Centre Pub",
        "maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.sodium_current_i_p_max_centre_pub",
        "description": "Sodium Current I P Max Centre Pub. Maps to source symbol `i_p_max_Centre_Published`. Units: nanoA. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current_i_p_max_periphery",
        "label": "Sodium Current I P Max Periphery",
        "maps_to": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.sodium_current_i_p_max_periphery",
        "description": "Sodium Current I P Max Periphery. Maps to source symbol `i_p_max_Periphery_Published`. Units: nanoA. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Garny2003 - Mathematical Action Potentials Periphery Sinoatrial Node Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model",
      "alias": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model",
      "parameters": {
        "model_path": "data/garny_kohl_hunter_boyett_noble_2003.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model_state"
      ],
      "from": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model_summary"
      ],
      "from": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model_trajectory"
      ],
      "from": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model_variable_labels"
      ],
      "from": "physiology_cellml_garny_kohl_hunter_boyett_noble_2003_garnykohlhunterboyettnoble2003_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Garny, Kohl, Hunter, Boyett, Noble, 2003. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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