Schoeberl2002 - Dynamics Map Kinase Cascade Activated By Surface Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_egf",
        "label": "Initial Egf",
        "maps_to": "physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model.initial_egf",
        "description": "Initial value for Egf. Maps to source symbol `c1`. Units: molecules. Naming evidence: source metadata names `c1` as `EGF`.",
        "accepted_units": [
          "molecules"
        ]
      },
      {
        "name": "initial_egf_egfr",
        "label": "Initial Egf Egfr",
        "maps_to": "physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model.initial_egf_egfr",
        "description": "Initial value for Egf Egfr. Maps to source symbol `c3`. Units: molecules. Naming evidence: source metadata names `c3` as `EGF-EGFR`.",
        "accepted_units": [
          "molecules"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model.variable_labels"
      },
      {
        "name": "egf_egfr_2_gap",
        "label": "Egf Egfr 2 Gap",
        "maps_to": "physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model.egf_egfr_2_gap",
        "description": "Egf Egfr 2 Gap. Maps to source symbol `c15`. Units: molecules. Naming evidence: source metadata names `c15` as `(EGF-EGFR*)2-GAP`."
      },
      {
        "name": "egf_egfri",
        "label": "Egf Egfri",
        "maps_to": "physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model.egf_egfri",
        "description": "Egf Egfri. Maps to source symbol `c10`. Units: molecules. Naming evidence: source metadata names `c10` as `EGF-EGFRi`."
      },
      {
        "name": "egf_egfri_2_c11",
        "label": "Egf Egfri 2 C11",
        "maps_to": "physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model.egf_egfri_2_c11",
        "description": "Egf Egfri 2 C11. Maps to source symbol `c11`. Units: molecules. Naming evidence: source metadata names `c11` as `(EGF-EGFRi)2`."
      },
      {
        "name": "egfideg",
        "label": "Egfideg",
        "maps_to": "physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model.egfideg",
        "description": "Egfideg. Maps to source symbol `c13`. Units: molecules. Naming evidence: source metadata names `c13` as `EGFideg`."
      },
      {
        "name": "gap",
        "label": "Gap",
        "maps_to": "physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model.gap",
        "description": "Gap. Maps to source symbol `c14`. Units: molecules. Naming evidence: source metadata names `c14` as `GAP`."
      },
      {
        "name": "prot",
        "label": "Prot",
        "maps_to": "physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model.prot",
        "description": "Prot. Maps to source symbol `c12`. Units: molecules. Naming evidence: source metadata names `c12` as `Prot`."
      }
    ]
  },
  "title": "Schoeberl2002 - Dynamics Map Kinase Cascade Activated By Surface Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model",
      "alias": "physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model",
      "parameters": {
        "model_path": "data/Schoeberl_EichlerJonsson_Gilles_Muller_2002.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model_state"
      ],
      "from": "physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model_summary"
      ],
      "from": "physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model_trajectory"
      ],
      "from": "physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model_variable_labels"
      ],
      "from": "physiology_cellml_schoeberl_eichler_jonsson_gilles_muller_2002_schoeberleichlerjonssongillesmuller2002_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Schoeberl, Eichler-Jonsson, Gilles, Muller, 2002. Public controls and outputs are mapped to real source symbols for signalling physiology.",
  "schema_version": "2.0"
}