Physiome 5d4 - Seir Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_main_e",
        "label": "Initial Main E",
        "maps_to": "physiology_cellml_seir_5d4_model.initial_main_e",
        "description": "Initial value for Main E. Maps to source symbol `E`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_main_p",
        "label": "Initial Main P",
        "maps_to": "physiology_cellml_seir_5d4_model.initial_main_p",
        "description": "Initial value for Main P. Maps to source symbol `P`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_seir_5d4_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_seir_5d4_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_seir_5d4_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_seir_5d4_model.variable_labels"
      },
      {
        "name": "main_e",
        "label": "Main E",
        "maps_to": "physiology_cellml_seir_5d4_model.main_e",
        "description": "Main E. Maps to source symbol `E`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "main_p",
        "label": "Main P",
        "maps_to": "physiology_cellml_seir_5d4_model.main_p",
        "description": "Main P. Maps to source symbol `P`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_state_i_t",
        "label": "Model State I T (source I_t)",
        "maps_to": "physiology_cellml_seir_5d4_model.model_state_i_t",
        "description": "Model State I T (source I_t). Maps to source symbol `I_t`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "model_state_i_u",
        "label": "Model State I U (source I_u)",
        "maps_to": "physiology_cellml_seir_5d4_model.model_state_i_u",
        "description": "Model State I U (source I_u). Maps to source symbol `I_u`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "model_state_r_t",
        "label": "Model State R T (source R_t)",
        "maps_to": "physiology_cellml_seir_5d4_model.model_state_r_t",
        "description": "Model State R T (source R_t). Maps to source symbol `R_t`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "model_state_r_u",
        "label": "Model State R U (source R_u)",
        "maps_to": "physiology_cellml_seir_5d4_model.model_state_r_u",
        "description": "Model State R U (source R_u). Maps to source symbol `R_u`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      }
    ]
  },
  "title": "Physiome 5d4 - Seir Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_seir_5d4_model",
      "alias": "physiology_cellml_seir_5d4_model",
      "parameters": {
        "model_path": "data/COVIDSim.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_seir_5d4_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_seir_5d4_model_state"
      ],
      "from": "physiology_cellml_seir_5d4_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_seir_5d4_model_summary"
      ],
      "from": "physiology_cellml_seir_5d4_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_seir_5d4_model_trajectory"
      ],
      "from": "physiology_cellml_seir_5d4_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_seir_5d4_model_variable_labels"
      ],
      "from": "physiology_cellml_seir_5d4_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for SEIR. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}