About lab
A model of G protein activation using ordinary differential equations. Used to fit to experimental data obtained from the TRUPATH platform.
Runtime
Duration1
Comms Step0.1
Runs
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Metadata
Packageredfern-nichols2023-gpcr-cubic-ternary-complex-with-g-protein-cy
Created2026-05-17
Updated2026-05-17
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "event_ligand_applied",
"label": "Event Ligand Applied",
"maps_to": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.event_ligand_applied",
"description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `Event__Ligand__Applied`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.species_labels"
},
{
"name": "camp",
"maps_to": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.camp"
},
{
"name": "atp",
"maps_to": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.atp"
},
{
"name": "model_state_ac",
"maps_to": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.model_state_ac"
},
{
"name": "model_state_ri",
"maps_to": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.model_state_ri"
},
{
"name": "ri_g",
"maps_to": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.ri_g"
},
{
"name": "ra_g",
"maps_to": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.ra_g"
}
]
},
"tags": [
"generegulation",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Redfern Nichols2023 Gpcr Cubic Ternary Complex With G Protein Cycle Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model",
"alias": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model_state"
],
"from": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model_summary"
],
"from": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model_species_labels"
],
"from": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "A model of G protein activation using ordinary differential equations. Used to fit to experimental data obtained from the TRUPATH platform.",
"schema_version": "2.0"
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