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Redfern Nichols2023 Gpcr Cubic Ternary Complex With G Protein Cycle Lab

About lab

A model of G protein activation using ordinary differential equations. Used to fit to experimental data obtained from the TRUPATH platform.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageredfern-nichols2023-gpcr-cubic-ternary-complex-with-g-protein-cy
Created2026-05-17
Updated2026-05-17
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "event_ligand_applied",
        "label": "Event Ligand Applied",
        "maps_to": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.event_ligand_applied",
        "description": "Source parameter exposed because its SBML label indicates a boundary, stimulus, dose, ligand, protocol, substrate, or environmental control. Maps to SBML symbol `Event__Ligand__Applied`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.species_labels"
      },
      {
        "name": "camp",
        "maps_to": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.camp"
      },
      {
        "name": "atp",
        "maps_to": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.atp"
      },
      {
        "name": "model_state_ac",
        "maps_to": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.model_state_ac"
      },
      {
        "name": "model_state_ri",
        "maps_to": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.model_state_ri"
      },
      {
        "name": "ri_g",
        "maps_to": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.ri_g"
      },
      {
        "name": "ra_g",
        "maps_to": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.ra_g"
      }
    ]
  },
  "tags": [
    "generegulation",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Redfern Nichols2023 Gpcr Cubic Ternary Complex With G Protein Cycle Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model",
      "alias": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model_state"
      ],
      "from": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model_summary"
      ],
      "from": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model_species_labels"
      ],
      "from": "systemsbiology_sbml_gpcr_cubic_ternary_complex_with_g_protein_cycle_model2306220001_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "A model of G protein activation using ordinary differential equations. Used to fit to experimental data obtained from the TRUPATH platform.",
  "schema_version": "2.0"
}

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