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Chance1952 Catalase Mechanism Lab

About lab

This model is described in the article: The mechanism of catalase action. It can be used to explore systemsbiology chance1952 catalase mechanism BioModels0000000282 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagechance1952-catalase-mechanism-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_product_2",
        "label": "Initial Product 2",
        "maps_to": "systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model.initial_product_2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `p2`."
      },
      {
        "name": "initial_product_1",
        "label": "Initial Product 1",
        "maps_to": "systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model.initial_product_1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `p1`."
      },
      {
        "name": "initial_substrate_s_hydrogen_peroxide",
        "label": "Initial Substrate S Hydrogen Peroxide",
        "maps_to": "systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model.initial_substrate_s_hydrogen_peroxide",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x`."
      },
      {
        "name": "initial_enzyme_e_catalase",
        "label": "Initial Enzyme E Catalase",
        "maps_to": "systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model.initial_enzyme_e_catalase",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `e`."
      },
      {
        "name": "initial_enzyme_substrate_complex_es_catalase_hydrogen_peroxide",
        "label": "Initial Enzyme Substrate Complex Es Catalase Hydrogen Peroxide",
        "maps_to": "systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model.initial_enzyme_substrate_complex_es_catalase_hydrogen_peroxide",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `p`."
      },
      {
        "name": "initial_donor_ah2",
        "label": "Initial Donor AH2",
        "maps_to": "systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model.initial_donor_ah2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `a`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model.species_labels"
      },
      {
        "name": "product_2",
        "maps_to": "systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model.product_2"
      },
      {
        "name": "product_1",
        "maps_to": "systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model.product_1"
      },
      {
        "name": "substrate_s_hydrogen_peroxide",
        "maps_to": "systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model.substrate_s_hydrogen_peroxide"
      },
      {
        "name": "enzyme_e_catalase",
        "maps_to": "systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model.enzyme_e_catalase"
      },
      {
        "name": "enzyme_substrate_complex_es_catalase_hydrogen_peroxide",
        "maps_to": "systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model.enzyme_substrate_complex_es_catalase_hydrogen_peroxide"
      },
      {
        "name": "donor_ah2",
        "maps_to": "systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model.donor_ah2"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Chance1952 Catalase Mechanism Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model",
      "alias": "systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model_state"
      ],
      "from": "systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model_summary"
      ],
      "from": "systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model_species_labels"
      ],
      "from": "systemsbiology_sbml_chance1952_catalase_mechanism_biomd0000000282_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This model is described in the article: The mechanism of catalase action. It can be used to explore systemsbiology chance1952 catalase mechanism BioModels0000000282 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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