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Wang2006 - ATP Induced Intracellular Calcium Oscillations Lab

About lab

Source-faithful physiology lab for Wang, Huang, Huang, 2006. Public controls and outputs are mapped to real source symbols for calcium handling.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

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Completed0
Failed0

Metadata

Packagewang2006-atp-induced-intracellular-calcium-oscillations-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_inositol_trisphosphate",
        "label": "Initial Inositol Trisphosphate",
        "maps_to": "physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model.initial_inositol_trisphosphate",
        "description": "Initial value for Inositol Trisphosphate. Maps to source symbol `IP_3`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "micromolar"
        ]
      },
      {
        "name": "initial_aplc",
        "label": "Initial Aplc",
        "maps_to": "physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model.initial_aplc",
        "description": "Initial value for Aplc. Maps to source symbol `APLC`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "micromolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model.variable_labels"
      },
      {
        "name": "inositol_trisphosphate",
        "label": "Inositol Trisphosphate",
        "maps_to": "physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model.inositol_trisphosphate",
        "description": "Inositol Trisphosphate. Maps to source symbol `IP_3`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "aplc",
        "label": "Aplc",
        "maps_to": "physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model.aplc",
        "description": "Aplc. Maps to source symbol `APLC`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "c_cyt_concentration",
        "label": "C Cyt Concentration",
        "maps_to": "physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model.c_cyt_concentration",
        "description": "C Cyt Concentration. Maps to source symbol `C_cyt`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "c_er_concentration",
        "label": "C Er Concentration",
        "maps_to": "physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model.c_er_concentration",
        "description": "C Er Concentration. Maps to source symbol `C_ER`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "g_gtp_g",
        "label": "G Gtp G",
        "maps_to": "physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model.g_gtp_g",
        "description": "G Gtp G. Maps to source symbol `G`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "beta",
        "label": "Beta",
        "maps_to": "physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model.beta",
        "description": "Beta. Maps to source symbol `beta`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Wang2006 - ATP Induced Intracellular Calcium Oscillations Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model",
      "alias": "physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model",
      "parameters": {
        "model_path": "data/wang_2006.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model_state"
      ],
      "from": "physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model_summary"
      ],
      "from": "physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model_trajectory"
      ],
      "from": "physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model_variable_labels"
      ],
      "from": "physiology_cellml_wang_huang_huang_2006_wanghuanghuang2006_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Wang, Huang, Huang, 2006. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}

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