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Ndairou2020 - early-stage transmission dynamics of COVID-19 in Wuhan Lab

About lab

Single-model lab wrapper for Ndairou2020 - early-stage transmission dynamics of COVID-19 in Wuhan. We propose a compartmental mathematical model for the spread of the COVID-19 disease with special focus on the transmissibility of super-spreaders individuals. It can be used to explore transmission dynamics and compare scenario outcomes across conditions.

Runtime

Duration10
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagendairou2020-early-stage-transmission-dynamics-of-covid-19-in-wuh
Created2026-05-15
Updated2026-05-15
biomodels_ebicuratedepidemiologyfaithfulsbmltelluriumvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "transmission_rate",
        "label": "Transmission Rate",
        "maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.transmission_rate"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Model state",
        "maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Species labels",
        "maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.species_labels"
      },
      {
        "name": "exposed",
        "label": "Exposed",
        "maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.exposed"
      },
      {
        "name": "infectious",
        "label": "Infectious",
        "maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.infectious"
      },
      {
        "name": "hospitalised",
        "label": "Hospitalised",
        "maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.hospitalised"
      },
      {
        "name": "fatalities",
        "label": "Fatalities",
        "maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.fatalities"
      },
      {
        "name": "susceptible",
        "label": "Susceptible",
        "maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.susceptible"
      },
      {
        "name": "recovered",
        "label": "Recovered",
        "maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.recovered"
      },
      {
        "name": "super_spreaders",
        "label": "Super spreaders",
        "maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.super_spreaders"
      },
      {
        "name": "asymptomatic",
        "label": "Asymptomatic",
        "maps_to": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.asymptomatic"
      }
    ]
  },
  "title": "Ndairou2020 - early-stage transmission dynamics of COVID-19 in Wuhan Lab",
  "models": [
    {
      "path": "owned/models/epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model",
      "alias": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model",
      "parameters": {
        "model_path": "data/BIOMD0000000958.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model_state"
      ],
      "from": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.state"
    },
    {
      "to": [
        "visualisation.epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model_summary"
      ],
      "from": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.summary"
    },
    {
      "to": [
        "visualisation.epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model_species_labels"
      ],
      "from": "epidemiology_sbml_ndairou2020_early_stage_transmission_dynamics_of_biomd0000000958_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Single-model lab wrapper for Ndairou2020 - early-stage transmission dynamics of COVID-19 in Wuhan. We propose a compartmental mathematical model for the spread of the COVID-19 disease with special focus on the transmissibility of super-spreaders individuals. It can be used to explore transmission dynamics and compare scenario outcomes across conditions.",
  "schema_version": "2.0"
}

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