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Saucerman2008 - Reaction Calcium N Lab

About lab

Source-faithful physiology lab for Saucerman, Bers, 2008. Public controls and outputs are mapped to real source symbols for calcium handling.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagesaucerman2008-reaction-calcium-n-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_ca2_ca_m",
        "label": "Initial Ca2 Ca M",
        "maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.initial_ca2_ca_m",
        "description": "Initial value for Ca2 Ca M. Maps to source symbol `Ca2CaM`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "micromolar"
        ]
      },
      {
        "name": "initial_ca2_ca_mb",
        "label": "Initial Ca2 Ca Mb",
        "maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.initial_ca2_ca_mb",
        "description": "Initial value for Ca2 Ca Mb. Maps to source symbol `Ca2CaMB`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "micromolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.variable_labels"
      },
      {
        "name": "ca2_ca_m",
        "label": "Ca2 Ca M",
        "maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.ca2_ca_m",
        "description": "Ca2 Ca M. Maps to source symbol `Ca2CaM`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca2_ca_mb",
        "label": "Ca2 Ca Mb",
        "maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.ca2_ca_mb",
        "description": "Ca2 Ca Mb. Maps to source symbol `Ca2CaMB`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca2_ca_mca_n",
        "label": "Ca2 Ca Mca N",
        "maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.ca2_ca_mca_n",
        "description": "Ca2 Ca Mca N. Maps to source symbol `Ca2CaMCaN`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca4_ca_m",
        "label": "Ca4 Ca M",
        "maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.ca4_ca_m",
        "description": "Ca4 Ca M. Maps to source symbol `Ca4CaM`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca4_ca_mb",
        "label": "Ca4 Ca Mb",
        "maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.ca4_ca_mb",
        "description": "Ca4 Ca Mb. Maps to source symbol `Ca4CaMB`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca4_ca_mca_n",
        "label": "Ca4 Ca Mca N",
        "maps_to": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.ca4_ca_mca_n",
        "description": "Ca4 Ca Mca N. Maps to source symbol `Ca4CaMCaN`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Saucerman2008 - Reaction Calcium N Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_saucerman_bers_2008_saucermanbers2008_model",
      "alias": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model",
      "parameters": {
        "model_path": "data/saucerman_2008_cytosol.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_saucerman_bers_2008_saucermanbers2008_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_saucerman_bers_2008_saucermanbers2008_model_state"
      ],
      "from": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_saucerman_bers_2008_saucermanbers2008_model_summary"
      ],
      "from": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_saucerman_bers_2008_saucermanbers2008_model_trajectory"
      ],
      "from": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_saucerman_bers_2008_saucermanbers2008_model_variable_labels"
      ],
      "from": "physiology_cellml_saucerman_bers_2008_saucermanbers2008_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Saucerman, Bers, 2008. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}

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