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Izakov1991 - Izakov Katsnelson Blyakhman Markhasin Shkylar 19 Lab

About lab

Source-faithful physiology lab for Izakov, Katsnelson, Blyakhman, Markhasin, Shkylar, 1991. Public controls and outputs are mapped to real source symbols for calcium handling.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packageizakov1991-izakov-katsnelson-blyakhman-markhasin-shkylar-19-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_a_1",
        "label": "Initial Model State A 1 (source A_1)",
        "maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.initial_model_state_a_1",
        "description": "Initial value for Model State A 1 (source A_1). Maps to source symbol `A_1`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_model_state_n_2",
        "label": "Initial Model State N 2 (source n_2)",
        "maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.initial_model_state_n_2",
        "description": "Initial value for Model State N 2 (source n_2). Maps to source symbol `n_2`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.variable_labels"
      },
      {
        "name": "alpha_1",
        "label": "Alpha 1",
        "maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.alpha_1",
        "description": "Alpha 1. Maps to source symbol `alpha_1`. Units: per_um. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "alpha_2",
        "label": "Alpha 2",
        "maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.alpha_2",
        "description": "Alpha 2. Maps to source symbol `alpha_2`. Units: per_um. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "phi_a_1",
        "label": "Phi A 1",
        "maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.phi_a_1",
        "description": "Phi A 1. Maps to source symbol `phi_A_1`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_state_a_1",
        "label": "Model State A 1 (source A_1)",
        "maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.model_state_a_1",
        "description": "Model State A 1 (source A_1). Maps to source symbol `A_1`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "model_state_n_2",
        "label": "Model State N 2 (source n_2)",
        "maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.model_state_n_2",
        "description": "Model State N 2 (source n_2). Maps to source symbol `n_2`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "beta_1",
        "label": "Beta 1",
        "maps_to": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.beta_1",
        "description": "Beta 1. Maps to source symbol `beta_1`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Izakov1991 - Izakov Katsnelson Blyakhman Markhasin Shkylar 19 Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model",
      "alias": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model",
      "parameters": {
        "model_path": "data/izakov_katsnelson_blyakhman_markhasin_shkylar_1991.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model_state"
      ],
      "from": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model_summary"
      ],
      "from": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model_trajectory"
      ],
      "from": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model_variable_labels"
      ],
      "from": "physiology_cellml_izakov_katsnelson_blyakhman_markhasin_shkylar_19_izakovkatsnelsonblyakhmanmarkhasinshkylar1991_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Izakov, Katsnelson, Blyakhman, Markhasin, Shkylar, 1991. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}

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