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Yamaguchi1996 Myocardialca2 Lab

About lab

This a model from the article: Constancy and variability of contractile efficiency as a function of calcium andcross-bridge kinetics: simulation. Yamaguchi H, Takaki M, Matsubara H, Yasuhara S, Suga H.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageyamaguchi1996-myocardialca2-lab
Created2026-05-17
Updated2026-05-17
cardiovascularphysiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_tn_ca",
        "label": "Initial Tn Ca",
        "maps_to": "systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model.initial_tn_ca",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `TnCa`."
      },
      {
        "name": "initial_model_state_fti",
        "label": "Initial Model State Fti",
        "maps_to": "systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model.initial_model_state_fti",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `FTI`."
      },
      {
        "name": "initial_cum_cb_on",
        "label": "Initial Cum Cb On",
        "maps_to": "systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model.initial_cum_cb_on",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CumCB_on`."
      },
      {
        "name": "initial_cum_cb_off",
        "label": "Initial Cum Cb Off",
        "maps_to": "systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model.initial_cum_cb_off",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CumCB_off`."
      },
      {
        "name": "initial_cb_on",
        "label": "Initial Cb On",
        "maps_to": "systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model.initial_cb_on",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CB_on`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model.species_labels"
      },
      {
        "name": "tn_ca",
        "maps_to": "systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model.tn_ca"
      },
      {
        "name": "fti",
        "maps_to": "systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model.fti"
      },
      {
        "name": "cum_cb_on",
        "maps_to": "systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model.cum_cb_on"
      },
      {
        "name": "cum_cb_off",
        "maps_to": "systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model.cum_cb_off"
      },
      {
        "name": "cb_on",
        "maps_to": "systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model.cb_on"
      }
    ]
  },
  "tags": [
    "cardiovascular",
    "physiology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Yamaguchi1996 Myocardialca2 Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model",
      "alias": "systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model_state"
      ],
      "from": "systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model_summary"
      ],
      "from": "systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model_species_labels"
      ],
      "from": "systemsbiology_sbml_yamaguchi1996_myocardialca2_model1006230032_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This a model from the article: Constancy and variability of contractile efficiency as a function of calcium andcross-bridge kinetics: simulation. Yamaguchi H, Takaki M, Matsubara H, Yasuhara S, Suga H.",
  "schema_version": "2.0"
}

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