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Gulati2014 - Simplified model of fibrinogen recovery following brown snake bite_1 Lab

About lab

Bridging systems biology and pharmacokinetics–pharmacodynamics has resulted in models that are highly complex and complicated. They usually contain large numbers of states and parameters and describe.

Runtime

Duration10
Comms Step0.5

Runs

Total0
Completed0
Failed0

Metadata

Packagegulati2014-simplified-model-of-fibrinogen-recovery-following-bro
Created2026-05-16
Updated2026-05-16
pharmacologytoxicologyphysiologycoagulationsbmltelluriumfaithfulbiomodels_ebivisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "brown_snake_venom_fraction",
        "label": "Brown Snake Venom Fraction",
        "maps_to": "pharmacology_sbml_gulati2014_simplified_model_of_fibrinogen_recove_model1805090001_model.brown_snake_venom_fraction"
      },
      {
        "name": "initial_plasma_venom",
        "label": "Initial Plasma Venom",
        "maps_to": "pharmacology_sbml_gulati2014_simplified_model_of_fibrinogen_recove_model1805090001_model.initial_plasma_venom"
      },
      {
        "name": "initial_thrombin_activity",
        "label": "Initial Thrombin Activity",
        "maps_to": "pharmacology_sbml_gulati2014_simplified_model_of_fibrinogen_recove_model1805090001_model.initial_thrombin_activity"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Tracked source state",
        "maps_to": "pharmacology_sbml_gulati2014_simplified_model_of_fibrinogen_recove_model1805090001_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "pharmacology_sbml_gulati2014_simplified_model_of_fibrinogen_recove_model1805090001_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "pharmacology_sbml_gulati2014_simplified_model_of_fibrinogen_recove_model1805090001_model.species_labels"
      },
      {
        "name": "plasma_venom",
        "label": "Plasma Venom",
        "maps_to": "pharmacology_sbml_gulati2014_simplified_model_of_fibrinogen_recove_model1805090001_model.plasma_venom"
      },
      {
        "name": "fibrinogen_g_per_l",
        "label": "Fibrinogen G Per L",
        "maps_to": "pharmacology_sbml_gulati2014_simplified_model_of_fibrinogen_recove_model1805090001_model.fibrinogen_g_per_l"
      },
      {
        "name": "fibrinogen_pool",
        "label": "Fibrinogen Pool",
        "maps_to": "pharmacology_sbml_gulati2014_simplified_model_of_fibrinogen_recove_model1805090001_model.fibrinogen_pool"
      },
      {
        "name": "venom_absorption",
        "label": "Venom Absorption",
        "maps_to": "pharmacology_sbml_gulati2014_simplified_model_of_fibrinogen_recove_model1805090001_model.venom_absorption"
      },
      {
        "name": "thrombin_activity",
        "label": "Thrombin Activity",
        "maps_to": "pharmacology_sbml_gulati2014_simplified_model_of_fibrinogen_recove_model1805090001_model.thrombin_activity"
      }
    ]
  },
  "tags": [
    "pharmacology",
    "toxicology",
    "physiology",
    "coagulation",
    "sbml",
    "tellurium",
    "faithful",
    "biomodels_ebi"
  ],
  "title": "Gulati2014 - Simplified model of fibrinogen recovery following brown snake bite_1 Lab",
  "models": [
    {
      "path": "owned/models/pharmacology_sbml_gulati2014_simplified_model_of_fibrinogen_recove_model1805090001_model",
      "alias": "pharmacology_sbml_gulati2014_simplified_model_of_fibrinogen_recove_model1805090001_model",
      "parameters": {
        "model_path": "data/MODEL1805090001.xml",
        "integration_step": 0.05
      },
      "provenance": {
        "owned_path": "owned/models/pharmacology_sbml_gulati2014_simplified_model_of_fibrinogen_recove_model1805090001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.pharmacology_sbml_gulati2014_simplified_model_of_fibrinogen_recove_model1805090001_model_state"
      ],
      "from": "pharmacology_sbml_gulati2014_simplified_model_of_fibrinogen_recove_model1805090001_model.state"
    },
    {
      "to": [
        "visualisation.pharmacology_sbml_gulati2014_simplified_model_of_fibrinogen_recove_model1805090001_model_summary"
      ],
      "from": "pharmacology_sbml_gulati2014_simplified_model_of_fibrinogen_recove_model1805090001_model.summary"
    },
    {
      "to": [
        "visualisation.pharmacology_sbml_gulati2014_simplified_model_of_fibrinogen_recove_model1805090001_model_species_labels"
      ],
      "from": "pharmacology_sbml_gulati2014_simplified_model_of_fibrinogen_recove_model1805090001_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 0.5
  },
  "description": "Bridging systems biology and pharmacokinetics–pharmacodynamics has resulted in models that are highly complex and complicated. They usually contain large numbers of states and parameters and describe.",
  "schema_version": "2.0"
}

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