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Physiome 239 - Combine Archive Example Lab

About lab

Source-faithful physiology lab for Combine Archive Example. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

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Completed0
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Metadata

Packagephysiome-239-combine-archive-example-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_combine_archive_example_239_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "mV"
        ]
      },
      {
        "name": "initial_intracellular_calcium",
        "label": "Initial Intracellular Calcium",
        "maps_to": "physiology_cellml_combine_archive_example_239_model.initial_intracellular_calcium",
        "description": "Initial value for Intracellular Calcium. Maps to source symbol `Cai`. Units: concentration_units. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "concentration_units"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_combine_archive_example_239_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_combine_archive_example_239_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_combine_archive_example_239_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_combine_archive_example_239_model.variable_labels"
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_combine_archive_example_239_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `V`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "intracellular_calcium",
        "label": "Intracellular Calcium",
        "maps_to": "physiology_cellml_combine_archive_example_239_model.intracellular_calcium",
        "description": "Intracellular Calcium. Maps to source symbol `Cai`. Units: concentration_units. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_h_gate",
        "label": "Sodium H Gate",
        "maps_to": "physiology_cellml_combine_archive_example_239_model.sodium_h_gate",
        "description": "Sodium H Gate. Maps to source symbol `h`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_j_gate",
        "label": "Sodium J Gate",
        "maps_to": "physiology_cellml_combine_archive_example_239_model.sodium_j_gate",
        "description": "Sodium J Gate. Maps to source symbol `j`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_m_gate",
        "label": "Sodium M Gate",
        "maps_to": "physiology_cellml_combine_archive_example_239_model.sodium_m_gate",
        "description": "Sodium M Gate. Maps to source symbol `m`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "alpha_h",
        "label": "Alpha H",
        "maps_to": "physiology_cellml_combine_archive_example_239_model.alpha_h",
        "description": "Alpha H. Maps to source symbol `alpha_h`. Units: per_ms. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Physiome 239 - Combine Archive Example Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_combine_archive_example_239_model",
      "alias": "physiology_cellml_combine_archive_example_239_model",
      "parameters": {
        "model_path": "data/beeler_reuter_1977.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_combine_archive_example_239_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_combine_archive_example_239_model_state"
      ],
      "from": "physiology_cellml_combine_archive_example_239_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_combine_archive_example_239_model_summary"
      ],
      "from": "physiology_cellml_combine_archive_example_239_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_combine_archive_example_239_model_trajectory"
      ],
      "from": "physiology_cellml_combine_archive_example_239_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_combine_archive_example_239_model_variable_labels"
      ],
      "from": "physiology_cellml_combine_archive_example_239_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Combine Archive Example. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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