Perelson1996 - Hiv 1 Dynamics Vivo Virion Clearance Rate Infected Cell Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_density_state_vi",
        "label": "Initial Density State Vi (source VI)",
        "maps_to": "physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model.initial_density_state_vi",
        "description": "Initial value for Density State Vi (source VI). Maps to source symbol `VI`. Units: per_ml. Naming evidence: density-like units identify a concentration or density state.",
        "accepted_units": [
          "per_ml"
        ]
      },
      {
        "name": "initial_vni",
        "label": "Initial Vni",
        "maps_to": "physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model.initial_vni",
        "description": "Initial value for Vni. Maps to source symbol `VNI`. Units: per_ml. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "per_ml"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model.variable_labels"
      },
      {
        "name": "density_state_vi",
        "label": "Density State Vi (source VI)",
        "maps_to": "physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model.density_state_vi",
        "description": "Density State Vi (source VI). Maps to source symbol `VI`. Units: per_ml. Naming evidence: density-like units identify a concentration or density state."
      },
      {
        "name": "vni",
        "label": "Vni",
        "maps_to": "physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model.vni",
        "description": "Vni. Maps to source symbol `VNI`. Units: per_ml. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "t_star",
        "label": "T Star",
        "maps_to": "physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model.t_star",
        "description": "T Star. Maps to source symbol `T_star`. Units: per_ml. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "delta",
        "label": "Delta",
        "maps_to": "physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model.delta",
        "description": "Delta. Maps to source symbol `delta`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "density_state_state",
        "label": "Density State State (source T)",
        "maps_to": "physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model.density_state_state",
        "description": "Density State State (source T). Maps to source symbol `T`. Units: per_ml. Naming evidence: density-like units identify a concentration or density state."
      },
      {
        "name": "viral_quantity_v",
        "label": "Viral Quantity V (source V)",
        "maps_to": "physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model.viral_quantity_v",
        "description": "Viral Quantity V (source V). Maps to source symbol `V`. Units: per_ml. Naming evidence: viral/infection context supports a conservative viral quantity label."
      }
    ]
  },
  "title": "Perelson1996 - Hiv 1 Dynamics Vivo Virion Clearance Rate Infected Cell Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model",
      "alias": "physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model",
      "parameters": {
        "model_path": "data/perelson_neumann_markowitz_leonard_ho_1996.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model_state"
      ],
      "from": "physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model_summary"
      ],
      "from": "physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model_trajectory"
      ],
      "from": "physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model_variable_labels"
      ],
      "from": "physiology_cellml_perelson_neumann_markowitz_leonard_ho_1996_perelsonneumannmarkowitzleonardho1996_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Perelson, Neumann, Markowitz, Leonard, Ho, 1996. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}