About lab
Clean Biosimulant lab for systems signaling model: Cellière2011 - Plasticity of TGF-β Signalling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
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Completed0
Failed0
Metadata
Packagecelli-re2011-plasticity-of-tgf-signalling-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_tgf_beta",
"label": "Initial TGF-beta",
"maps_to": "signaling_sbml_celli_re2011_plasticity_of_tgf_signalling_biomd0000000600_model.initial_tgf_beta",
"description": "Initial level of TGF-beta. Maps to SBML symbol `TGFb`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_i_smad_tgf_beta_tgf_beta_r_p",
"label": "Initial I SMAD TGF-beta TGF-beta R P",
"maps_to": "signaling_sbml_celli_re2011_plasticity_of_tgf_signalling_biomd0000000600_model.initial_i_smad_tgf_beta_tgf_beta_r_p",
"description": "Initial level of I SMAD TGF-beta TGF-beta R P. Maps to SBML symbol `I_Smad_TGFb_TGFbR_P`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_tgf_beta_tgf_beta_r",
"label": "Initial TGF-beta TGF-beta R",
"maps_to": "signaling_sbml_celli_re2011_plasticity_of_tgf_signalling_biomd0000000600_model.initial_tgf_beta_tgf_beta_r",
"description": "Initial level of TGF-beta TGF-beta R. Maps to SBML symbol `TGFb_TGFbR`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "i_smad_tgf_beta_tgf_beta_r_p",
"label": "I SMAD TGF-beta TGF-beta R P",
"maps_to": "signaling_sbml_celli_re2011_plasticity_of_tgf_signalling_biomd0000000600_model.i_smad_tgf_beta_tgf_beta_r_p",
"description": "I SMAD TGF-beta TGF-beta R P. Maps to SBML symbol `I_Smad_TGFb_TGFbR_P` and is emitted in native SBML units."
},
{
"name": "smad",
"label": "SMAD",
"maps_to": "signaling_sbml_celli_re2011_plasticity_of_tgf_signalling_biomd0000000600_model.smad",
"description": "SMAD. Maps to SBML symbol `Smad` and is emitted in native SBML units."
},
{
"name": "smad_p",
"label": "SMAD P",
"maps_to": "signaling_sbml_celli_re2011_plasticity_of_tgf_signalling_biomd0000000600_model.smad_p",
"description": "SMAD P. Maps to SBML symbol `Smad_P` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_celli_re2011_plasticity_of_tgf_signalling_biomd0000000600_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_celli_re2011_plasticity_of_tgf_signalling_biomd0000000600_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_celli_re2011_plasticity_of_tgf_signalling_biomd0000000600_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cellular-signaling"
],
"title": "Cellière2011 - Plasticity of TGF-β Signalling Lab",
"models": [
{
"path": "owned/models/signaling_sbml_celli_re2011_plasticity_of_tgf_signalling_biomd0000000600_model",
"alias": "signaling_sbml_celli_re2011_plasticity_of_tgf_signalling_biomd0000000600_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_celli_re2011_plasticity_of_tgf_signalling_biomd0000000600_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_celli_re2011_plasticity_of_tgf_signalling_biomd0000000600_model_state"
],
"from": "signaling_sbml_celli_re2011_plasticity_of_tgf_signalling_biomd0000000600_model.state"
},
{
"to": [
"visualisation.signaling_sbml_celli_re2011_plasticity_of_tgf_signalling_biomd0000000600_model_summary"
],
"from": "signaling_sbml_celli_re2011_plasticity_of_tgf_signalling_biomd0000000600_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_celli_re2011_plasticity_of_tgf_signalling_biomd0000000600_model_species_labels"
],
"from": "signaling_sbml_celli_re2011_plasticity_of_tgf_signalling_biomd0000000600_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Cellière2011 - Plasticity of TGF-β Signalling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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