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Rantasalo2016 Induced Stf B42 Lab

About lab

induced synthetic expression modulator. Rantasalo2015-Synthetic_expresion_modulator_inducedSTF_B42This model is part of a family of models describing a modular synthetic expression system that modulates the expression level of a gene in S. It can be used to explore generegulation rantasalo2016 synthetic expresion modulator indu dynamics and compare simulation behavior across conditions.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagerantasalo2016-induced-stf-b42-lab
Created2026-05-15
Updated2026-05-15
generegulationsbmlbiomodels_ebifaithfulvisualisation

Manifest

{
  "io": {
    "inputs": [],
    "outputs": [
      {
        "name": "mcherry_messenger_rna",
        "maps_to": "rantasalo2016_induced_stf_b42.mcherry_messenger_rna"
      },
      {
        "name": "mcherry_reporter",
        "maps_to": "rantasalo2016_induced_stf_b42.mcherry_reporter"
      },
      {
        "name": "cytosolic_transcription_factor",
        "maps_to": "rantasalo2016_induced_stf_b42.cytosolic_transcription_factor"
      },
      {
        "name": "met_transcription_factor",
        "maps_to": "rantasalo2016_induced_stf_b42.met_transcription_factor"
      },
      {
        "name": "state",
        "maps_to": "rantasalo2016_induced_stf_b42.state"
      },
      {
        "name": "summary",
        "maps_to": "rantasalo2016_induced_stf_b42.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "rantasalo2016_induced_stf_b42.species_labels"
      }
    ]
  },
  "title": "Rantasalo2016 Induced Stf B42 Lab",
  "models": [
    {
      "path": "owned/models/rantasalo2016_induced_stf_b42",
      "alias": "rantasalo2016_induced_stf_b42",
      "parameters": {
        "model_path": "data/MODEL1510230004.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/rantasalo2016_induced_stf_b42"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.rantasalo2016_induced_stf_b42_mcherry_messenger_rna"
      ],
      "from": "rantasalo2016_induced_stf_b42.mcherry_messenger_rna"
    },
    {
      "to": [
        "visualisation.rantasalo2016_induced_stf_b42_mcherry_reporter"
      ],
      "from": "rantasalo2016_induced_stf_b42.mcherry_reporter"
    },
    {
      "to": [
        "visualisation.rantasalo2016_induced_stf_b42_cytosolic_transcription_factor"
      ],
      "from": "rantasalo2016_induced_stf_b42.cytosolic_transcription_factor"
    },
    {
      "to": [
        "visualisation.rantasalo2016_induced_stf_b42_met_transcription_factor"
      ],
      "from": "rantasalo2016_induced_stf_b42.met_transcription_factor"
    },
    {
      "to": [
        "visualisation.rantasalo2016_induced_stf_b42_state"
      ],
      "from": "rantasalo2016_induced_stf_b42.state"
    },
    {
      "to": [
        "visualisation.rantasalo2016_induced_stf_b42_summary"
      ],
      "from": "rantasalo2016_induced_stf_b42.summary"
    },
    {
      "to": [
        "visualisation.rantasalo2016_induced_stf_b42_species_labels"
      ],
      "from": "rantasalo2016_induced_stf_b42.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "induced synthetic expression modulator. Rantasalo2015-Synthetic_expresion_modulator_inducedSTF_B42This model is part of a family of models describing a modular synthetic expression system that modulates the expression level of a gene in S. It can be used to explore generegulation rantasalo2016 synthetic expresion modulator indu dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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