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Day2015 - Early cellular innate and adaptive immune responses to ischemia/reperfusion injury and solid organ allotransplantation Lab

About lab

This is an ordinary differential equation model of the early inflammatory response during transplantion. Descriptions are included of the inflammatory events associated with the initial surgical proce.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packageday2015-early-cellular-innate-and-adaptive-immune-responses-to-i
Created2026-05-15
Updated2026-05-15
immunologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_unresolved_immune_observable_1",
        "label": "Initial Unresolved Immune Observable 1",
        "units": "native source value",
        "default": 4,
        "maps_to": "immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model.initial_unresolved_immune_observable_1",
        "description": "Initial Unresolved Immune Observable 1. Sets the initial value of bundled SBML species `D`."
      },
      {
        "name": "initial_unresolved_immune_observable_2",
        "label": "Initial Unresolved Immune Observable 2",
        "units": "native source value",
        "default": 0,
        "maps_to": "immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model.initial_unresolved_immune_observable_2",
        "description": "Initial Unresolved Immune Observable 2. Sets the initial value of bundled SBML species `DG`."
      },
      {
        "name": "initial_unresolved_immune_observable_3",
        "label": "Initial Unresolved Immune Observable 3",
        "units": "native source value",
        "default": 0,
        "maps_to": "immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model.initial_unresolved_immune_observable_3",
        "description": "Initial Unresolved Immune Observable 3. Sets the initial value of bundled SBML species `I`."
      },
      {
        "name": "initial_unresolved_immune_observable_4",
        "label": "Initial Unresolved Immune Observable 4",
        "units": "native source value",
        "default": 0.125,
        "maps_to": "immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model.initial_unresolved_immune_observable_4",
        "description": "Initial Unresolved Immune Observable 4. Sets the initial value of bundled SBML species `A`."
      },
      {
        "name": "initial_unresolved_immune_observable_5",
        "label": "Initial Unresolved Immune Observable 5",
        "units": "native source value",
        "default": 0,
        "maps_to": "immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model.initial_unresolved_immune_observable_5",
        "description": "Initial Unresolved Immune Observable 5. Sets the initial value of bundled SBML species `TP`."
      }
    ],
    "outputs": [
      {
        "name": "unresolved_immune_observable_1",
        "maps_to": "immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model.unresolved_immune_observable_1"
      },
      {
        "name": "unresolved_immune_observable_2",
        "maps_to": "immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model.unresolved_immune_observable_2"
      },
      {
        "name": "unresolved_immune_observable_3",
        "maps_to": "immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model.unresolved_immune_observable_3"
      },
      {
        "name": "unresolved_immune_observable_4",
        "maps_to": "immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model.unresolved_immune_observable_4"
      },
      {
        "name": "unresolved_immune_observable_5",
        "maps_to": "immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model.unresolved_immune_observable_5"
      },
      {
        "name": "state",
        "maps_to": "immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model.state"
      },
      {
        "name": "summary",
        "maps_to": "immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model.species_labels"
      }
    ]
  },
  "title": "Day2015 - Early cellular innate and adaptive immune responses to ischemia/reperfusion injury and solid organ allotransplantation Lab",
  "models": [
    {
      "path": "owned/models/immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model",
      "alias": "immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model",
      "provenance": {
        "owned_path": "owned/models/immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model_state"
      ],
      "from": "immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model.state"
    },
    {
      "to": [
        "visualisation.immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model_summary"
      ],
      "from": "immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model.summary"
    },
    {
      "to": [
        "visualisation.immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model_species_labels"
      ],
      "from": "immunology_sbml_day2015_early_cellular_innate_and_adaptive_immun_model1911190001_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "This is an ordinary differential equation model of the early inflammatory response during transplantion. Descriptions are included of the inflammatory events associated with the initial surgical proce.",
  "schema_version": "2.0"
}

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