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Basak_Cell_2007 Lab

About lab

Clean Biosimulant lab for NF-kB pathway signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebasak-cell-2007-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebinfkbvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_a_c_2pnq_level",
        "label": "A C 2pnq",
        "maps_to": "signaling_sbml_basak_cell_2007_model8478881246_model.initial_a_c_2pnq_level",
        "description": "A C 2pnq source parameter. Maps to SBML symbol `mw67DBC35D_6ABA_4E03_A921_AA3E88FCDA17` and preserves the bundled default."
      }
    ],
    "outputs": [
      {
        "name": "ik_ba_nfk_b",
        "label": "Ik Ba Nfk B",
        "maps_to": "signaling_sbml_basak_cell_2007_model8478881246_model.ik_ba_nfk_b",
        "description": "Ik Ba Nfk B. Maps to SBML symbol `mwB5B12B45_0F61_44BD_9781_989D8B015906` and is emitted in native SBML units."
      },
      {
        "name": "ik_ba_nfk_bn",
        "label": "Ik Ba Nfk Bn",
        "maps_to": "signaling_sbml_basak_cell_2007_model8478881246_model.ik_ba_nfk_bn",
        "description": "Ik Ba Nfk Bn. Maps to SBML symbol `mwA7D14F2B_20BE_4FF7_83B7_8B24C34D94A6` and is emitted in native SBML units."
      },
      {
        "name": "ik_ba_ikknfk_b",
        "label": "Ik Ba Ikknfk B",
        "maps_to": "signaling_sbml_basak_cell_2007_model8478881246_model.ik_ba_ikknfk_b",
        "description": "Ik Ba Ikknfk B. Maps to SBML symbol `mw67E597F5_E642_45A3_A377_0BD9CE41467B` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_basak_cell_2007_model8478881246_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_basak_cell_2007_model8478881246_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_basak_cell_2007_model8478881246_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "nfkb"
  ],
  "title": "Basak_Cell_2007 Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_basak_cell_2007_model8478881246_model",
      "alias": "signaling_sbml_basak_cell_2007_model8478881246_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_basak_cell_2007_model8478881246_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_basak_cell_2007_model8478881246_model_state"
      ],
      "from": "signaling_sbml_basak_cell_2007_model8478881246_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_basak_cell_2007_model8478881246_model_summary"
      ],
      "from": "signaling_sbml_basak_cell_2007_model8478881246_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_basak_cell_2007_model8478881246_model_species_labels"
      ],
      "from": "signaling_sbml_basak_cell_2007_model8478881246_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for NF-kB pathway signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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