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Schliemann2011 Tnf Proantiapoptosis Lab

About lab

This model is from the article: Heterogeneity Reduces Sensitivity of Cell Death for TNF-Stimuli Schliemann M, Bullinger E, Borchers S, Allgower F, Findeisen R, Scheurich P. It can be used to explore systemsbiology schliemann2011 tnf proantiapoptosis BioModels0000000407 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageschliemann2011-tnf-proantiapoptosis-lab
Created2026-05-17
Updated2026-05-17
generegulationimmunologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_p_casp8",
        "label": "Initial P Casp8",
        "maps_to": "systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model.initial_p_casp8",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `pCasp8`."
      },
      {
        "name": "initial_p_casp3",
        "label": "Initial P Casp3",
        "maps_to": "systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model.initial_p_casp3",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `pCasp3`."
      },
      {
        "name": "initial_tnf_e",
        "label": "Initial TNF E",
        "maps_to": "systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model.initial_tnf_e",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `TNF_E`."
      },
      {
        "name": "initial_p_casp6",
        "label": "Initial P Casp6",
        "maps_to": "systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model.initial_p_casp6",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `pCasp6`."
      },
      {
        "name": "initial_ik_ba_n_fk_b",
        "label": "Initial Ik Ba N Fk B",
        "maps_to": "systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model.initial_ik_ba_n_fk_b",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `IkBa_NFkB`."
      },
      {
        "name": "initial_tnfr_e",
        "label": "Initial Tnfr E",
        "maps_to": "systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model.initial_tnfr_e",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `TNFR_E`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model.species_labels"
      },
      {
        "name": "p_casp8",
        "maps_to": "systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model.p_casp8"
      },
      {
        "name": "p_casp3",
        "maps_to": "systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model.p_casp3"
      },
      {
        "name": "tnf_e",
        "maps_to": "systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model.tnf_e"
      },
      {
        "name": "p_casp6",
        "maps_to": "systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model.p_casp6"
      },
      {
        "name": "ik_ba_n_fk_b",
        "maps_to": "systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model.ik_ba_n_fk_b"
      },
      {
        "name": "tnfr_e",
        "maps_to": "systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model.tnfr_e"
      }
    ]
  },
  "tags": [
    "generegulation",
    "immunology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Schliemann2011 Tnf Proantiapoptosis Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model",
      "alias": "systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model_state"
      ],
      "from": "systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model_summary"
      ],
      "from": "systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model_species_labels"
      ],
      "from": "systemsbiology_sbml_schliemann2011_tnf_proantiapoptosis_biomd0000000407_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This model is from the article: Heterogeneity Reduces Sensitivity of Cell Death for TNF-Stimuli Schliemann M, Bullinger E, Borchers S, Allgower F, Findeisen R, Scheurich P. It can be used to explore systemsbiology schliemann2011 tnf proantiapoptosis BioModels0000000407 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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