About lab
Figure4 and Figure5 can be simulated by Copasi. Figure4 can be simulated in MathSBML as well.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagehatakeyama2003-mapk-lab
Created2026-05-17
Updated2026-05-17
signalingsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_internalization",
"label": "Initial Internalization",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.initial_internalization",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `internalization`."
},
{
"name": "initial_model_state_shc",
"label": "Initial Model State Shc",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.initial_model_state_shc",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Shc`."
},
{
"name": "initial_model_state_erk",
"label": "Initial Model State ERK",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.initial_model_state_erk",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ERK`."
},
{
"name": "initial_model_state_p_i",
"label": "Initial Model State P I",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.initial_model_state_p_i",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P_I`."
},
{
"name": "initial_model_state_hrg",
"label": "Initial Model State Hrg",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.initial_model_state_hrg",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `HRG`."
},
{
"name": "initial_ras_gdp",
"label": "Initial RAS Gdp",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.initial_ras_gdp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `RasGDP`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.species_labels"
},
{
"name": "internalization",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.internalization"
},
{
"name": "shc",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.shc"
},
{
"name": "erk",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.erk"
},
{
"name": "p_i",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.p_i"
},
{
"name": "hrg",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.hrg"
},
{
"name": "ras_gdp",
"maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.ras_gdp"
}
]
},
"tags": [
"signaling",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Hatakeyama2003 Mapk Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model",
"alias": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model_state"
],
"from": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model_summary"
],
"from": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model_species_labels"
],
"from": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Figure4 and Figure5 can be simulated by Copasi. Figure4 can be simulated in MathSBML as well.",
"schema_version": "2.0"
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