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Hatakeyama2003 Mapk Lab

About lab

Figure4 and Figure5 can be simulated by Copasi. Figure4 can be simulated in MathSBML as well.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagehatakeyama2003-mapk-lab
Created2026-05-17
Updated2026-05-17
signalingsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_internalization",
        "label": "Initial Internalization",
        "maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.initial_internalization",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `internalization`."
      },
      {
        "name": "initial_model_state_shc",
        "label": "Initial Model State Shc",
        "maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.initial_model_state_shc",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Shc`."
      },
      {
        "name": "initial_model_state_erk",
        "label": "Initial Model State ERK",
        "maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.initial_model_state_erk",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ERK`."
      },
      {
        "name": "initial_model_state_p_i",
        "label": "Initial Model State P I",
        "maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.initial_model_state_p_i",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `P_I`."
      },
      {
        "name": "initial_model_state_hrg",
        "label": "Initial Model State Hrg",
        "maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.initial_model_state_hrg",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `HRG`."
      },
      {
        "name": "initial_ras_gdp",
        "label": "Initial RAS Gdp",
        "maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.initial_ras_gdp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `RasGDP`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.species_labels"
      },
      {
        "name": "internalization",
        "maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.internalization"
      },
      {
        "name": "shc",
        "maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.shc"
      },
      {
        "name": "erk",
        "maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.erk"
      },
      {
        "name": "p_i",
        "maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.p_i"
      },
      {
        "name": "hrg",
        "maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.hrg"
      },
      {
        "name": "ras_gdp",
        "maps_to": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.ras_gdp"
      }
    ]
  },
  "tags": [
    "signaling",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Hatakeyama2003 Mapk Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model",
      "alias": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model_state"
      ],
      "from": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model_summary"
      ],
      "from": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model_species_labels"
      ],
      "from": "systemsbiology_sbml_hatakeyama2003_mapk_biomd0000000146_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Figure4 and Figure5 can be simulated by Copasi. Figure4 can be simulated in MathSBML as well.",
  "schema_version": "2.0"
}

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