About lab
constitutive synthetic expression modulator. Rantasalo2015-Synthetic_expresion_modulator_constitutiveSTF_B42This model is part of a family of models describing a modular synthetic expression system that modulates the expression level of a gene i. It can be used to explore generegulation rantasalo2016 synthetic expresion modulator cons dynamics and compare simulation behavior across conditions.
Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagerantasalo2016-constitutive-stf-b42-lab
Created2026-05-15
Updated2026-05-15
generegulationsbmlbiomodels_ebifaithfulvisualisation
Manifest
{
"io": {
"inputs": [],
"outputs": [
{
"name": "mcherry_messenger_rna",
"maps_to": "rantasalo2016_constitutive_stf_b42.mcherry_messenger_rna"
},
{
"name": "mcherry_reporter",
"maps_to": "rantasalo2016_constitutive_stf_b42.mcherry_reporter"
},
{
"name": "cytosolic_transcription_factor",
"maps_to": "rantasalo2016_constitutive_stf_b42.cytosolic_transcription_factor"
},
{
"name": "nuclear_transcription_factor",
"maps_to": "rantasalo2016_constitutive_stf_b42.nuclear_transcription_factor"
},
{
"name": "state",
"maps_to": "rantasalo2016_constitutive_stf_b42.state"
},
{
"name": "summary",
"maps_to": "rantasalo2016_constitutive_stf_b42.summary"
},
{
"name": "species_labels",
"maps_to": "rantasalo2016_constitutive_stf_b42.species_labels"
}
]
},
"title": "Rantasalo2016 Constitutive Stf B42 Lab",
"models": [
{
"path": "owned/models/rantasalo2016_constitutive_stf_b42",
"alias": "rantasalo2016_constitutive_stf_b42",
"parameters": {
"model_path": "data/MODEL1510230002.xml",
"integration_step": 0.1
},
"provenance": {
"owned_path": "owned/models/rantasalo2016_constitutive_stf_b42"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.rantasalo2016_constitutive_stf_b42_mcherry_messenger_rna"
],
"from": "rantasalo2016_constitutive_stf_b42.mcherry_messenger_rna"
},
{
"to": [
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],
"from": "rantasalo2016_constitutive_stf_b42.mcherry_reporter"
},
{
"to": [
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],
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},
{
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"visualisation.rantasalo2016_constitutive_stf_b42_nuclear_transcription_factor"
],
"from": "rantasalo2016_constitutive_stf_b42.nuclear_transcription_factor"
},
{
"to": [
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],
"from": "rantasalo2016_constitutive_stf_b42.state"
},
{
"to": [
"visualisation.rantasalo2016_constitutive_stf_b42_summary"
],
"from": "rantasalo2016_constitutive_stf_b42.summary"
},
{
"to": [
"visualisation.rantasalo2016_constitutive_stf_b42_species_labels"
],
"from": "rantasalo2016_constitutive_stf_b42.species_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"description": "constitutive synthetic expression modulator. Rantasalo2015-Synthetic_expresion_modulator_constitutiveSTF_B42This model is part of a family of models describing a modular synthetic expression system that modulates the expression level of a gene i. It can be used to explore generegulation rantasalo2016 synthetic expresion modulator cons dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
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