About lab
induced synthetic expression modulator. Rantasalo2015-Synthetic_expresion_modulator_inducedSTF_VP16This model is part of a family of models describing a modular synthetic expression system that modulates the expression level of a gene in S. It can be used to explore generegulation rantasalo2016 synthetic expresion modulator indu dynamics and compare simulation behavior across conditions.
Runtime
Duration10
Comms Step1
Runs
Total0
Completed0
Failed0
Metadata
Packagerantasalo2016-induced-stf-vp16-lab
Created2026-05-15
Updated2026-05-15
generegulationsbmlbiomodels_ebifaithfulvisualisation
Manifest
{
"io": {
"inputs": [],
"outputs": [
{
"name": "mcherry_messenger_rna",
"maps_to": "rantasalo2016_induced_stf_vp16.mcherry_messenger_rna"
},
{
"name": "mcherry_reporter",
"maps_to": "rantasalo2016_induced_stf_vp16.mcherry_reporter"
},
{
"name": "cytosolic_transcription_factor",
"maps_to": "rantasalo2016_induced_stf_vp16.cytosolic_transcription_factor"
},
{
"name": "met_transcription_factor",
"maps_to": "rantasalo2016_induced_stf_vp16.met_transcription_factor"
},
{
"name": "state",
"maps_to": "rantasalo2016_induced_stf_vp16.state"
},
{
"name": "summary",
"maps_to": "rantasalo2016_induced_stf_vp16.summary"
},
{
"name": "species_labels",
"maps_to": "rantasalo2016_induced_stf_vp16.species_labels"
}
]
},
"title": "Rantasalo2016 Induced Stf Vp16 Lab",
"models": [
{
"path": "owned/models/rantasalo2016_induced_stf_vp16",
"alias": "rantasalo2016_induced_stf_vp16",
"parameters": {
"model_path": "data/MODEL1510230005.xml",
"integration_step": 0.1
},
"provenance": {
"owned_path": "owned/models/rantasalo2016_induced_stf_vp16"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.rantasalo2016_induced_stf_vp16_mcherry_messenger_rna"
],
"from": "rantasalo2016_induced_stf_vp16.mcherry_messenger_rna"
},
{
"to": [
"visualisation.rantasalo2016_induced_stf_vp16_mcherry_reporter"
],
"from": "rantasalo2016_induced_stf_vp16.mcherry_reporter"
},
{
"to": [
"visualisation.rantasalo2016_induced_stf_vp16_cytosolic_transcription_factor"
],
"from": "rantasalo2016_induced_stf_vp16.cytosolic_transcription_factor"
},
{
"to": [
"visualisation.rantasalo2016_induced_stf_vp16_met_transcription_factor"
],
"from": "rantasalo2016_induced_stf_vp16.met_transcription_factor"
},
{
"to": [
"visualisation.rantasalo2016_induced_stf_vp16_state"
],
"from": "rantasalo2016_induced_stf_vp16.state"
},
{
"to": [
"visualisation.rantasalo2016_induced_stf_vp16_summary"
],
"from": "rantasalo2016_induced_stf_vp16.summary"
},
{
"to": [
"visualisation.rantasalo2016_induced_stf_vp16_species_labels"
],
"from": "rantasalo2016_induced_stf_vp16.species_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 1
},
"description": "induced synthetic expression modulator. Rantasalo2015-Synthetic_expresion_modulator_inducedSTF_VP16This model is part of a family of models describing a modular synthetic expression system that modulates the expression level of a gene in S. It can be used to explore generegulation rantasalo2016 synthetic expresion modulator indu dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
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