Wodarz2007 - Infection Dynamics Hiv Specific T Cells Does T Cell Boost Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_free_virus_particles",
        "label": "Initial Free Virus Particles",
        "maps_to": "physiology_cellml_wodarz_hamer_2007_2e6_model.initial_free_virus_particles",
        "description": "Initial value for Free Virus Particles. Maps to source symbol `v`. Units: dimensionless. Naming evidence: source metadata names `v` as `free virus particles`.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_infected_hiv_specific_cd4_positive_t_cells",
        "label": "Initial Infected HIV Specific CD4 Positive T Cells",
        "maps_to": "physiology_cellml_wodarz_hamer_2007_2e6_model.initial_infected_hiv_specific_cd4_positive_t_cells",
        "description": "Initial value for Infected HIV Specific CD4 Positive T Cells. Maps to source symbol `y`. Units: dimensionless. Naming evidence: source metadata names `y` as `infected HIV-specific CD4+ T cells`.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_wodarz_hamer_2007_2e6_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_wodarz_hamer_2007_2e6_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_wodarz_hamer_2007_2e6_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_wodarz_hamer_2007_2e6_model.variable_labels"
      },
      {
        "name": "free_virus_particles",
        "label": "Free Virus Particles",
        "maps_to": "physiology_cellml_wodarz_hamer_2007_2e6_model.free_virus_particles",
        "description": "Free Virus Particles. Maps to source symbol `v`. Units: dimensionless. Naming evidence: source metadata names `v` as `free virus particles`."
      },
      {
        "name": "infected_hiv_specific_cd4_positive_t_cells",
        "label": "Infected HIV Specific CD4 Positive T Cells",
        "maps_to": "physiology_cellml_wodarz_hamer_2007_2e6_model.infected_hiv_specific_cd4_positive_t_cells",
        "description": "Infected HIV Specific CD4 Positive T Cells. Maps to source symbol `y`. Units: dimensionless. Naming evidence: source metadata names `y` as `infected HIV-specific CD4+ T cells`."
      },
      {
        "name": "eta",
        "label": "Eta",
        "maps_to": "physiology_cellml_wodarz_hamer_2007_2e6_model.eta",
        "description": "Eta. Maps to source symbol `eta`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_parameter_k",
        "label": "Model Parameter K (source k)",
        "maps_to": "physiology_cellml_wodarz_hamer_2007_2e6_model.model_parameter_k",
        "description": "Model Parameter K (source k). Maps to source symbol `k`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "rate_constant_a",
        "label": "Rate Constant A (source a)",
        "maps_to": "physiology_cellml_wodarz_hamer_2007_2e6_model.rate_constant_a",
        "description": "Rate Constant A (source a). Maps to source symbol `a`. Units: first_order_rate_constant. Naming evidence: units identify a rate constant but not a fuller biological role."
      },
      {
        "name": "rate_constant_u",
        "label": "Rate Constant U (source u)",
        "maps_to": "physiology_cellml_wodarz_hamer_2007_2e6_model.rate_constant_u",
        "description": "Rate Constant U (source u). Maps to source symbol `u`. Units: first_order_rate_constant. Naming evidence: units identify a rate constant but not a fuller biological role."
      }
    ]
  },
  "title": "Wodarz2007 - Infection Dynamics Hiv Specific T Cells Does T Cell Boost Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_wodarz_hamer_2007_2e6_model",
      "alias": "physiology_cellml_wodarz_hamer_2007_2e6_model",
      "parameters": {
        "model_path": "data/wodarz_hamer_2007_a.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_wodarz_hamer_2007_2e6_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_wodarz_hamer_2007_2e6_model_state"
      ],
      "from": "physiology_cellml_wodarz_hamer_2007_2e6_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wodarz_hamer_2007_2e6_model_summary"
      ],
      "from": "physiology_cellml_wodarz_hamer_2007_2e6_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wodarz_hamer_2007_2e6_model_trajectory"
      ],
      "from": "physiology_cellml_wodarz_hamer_2007_2e6_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wodarz_hamer_2007_2e6_model_variable_labels"
      ],
      "from": "physiology_cellml_wodarz_hamer_2007_2e6_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Wodarz, Hamer, 2007. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}