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Bidkhori2012 - normal EGFR signalling Lab

About lab

Clean Biosimulant lab for JAK/STAT cytokine signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebidkhori2012-normal-egfr-signalling-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimapkegfrras-erkpi3k-aktjak-statoncologyvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_abstract_source_state_k115_level",
        "label": "Abstract source state K115",
        "maps_to": "signaling_sbml_bidkhori2012_normal_egfr_signalling_biomd0000000452_model.initial_abstract_source_state_k115_level",
        "description": "Abstract source state K115 source parameter. Maps to SBML symbol `mw1df2caba_8e41_4fe5_a1b5_7777eb98ed1c` and preserves the bundled default."
      },
      {
        "name": "initial_abstract_source_state_k121_level",
        "label": "Abstract source state K121",
        "maps_to": "signaling_sbml_bidkhori2012_normal_egfr_signalling_biomd0000000452_model.initial_abstract_source_state_k121_level",
        "description": "Abstract source state K121 source parameter. Maps to SBML symbol `mw7aba6db3_c7ec_4192_bb5e_0ac4b466c1a5` and preserves the bundled default."
      },
      {
        "name": "initial_abstract_source_state_k46_level",
        "label": "Abstract source state K46",
        "maps_to": "signaling_sbml_bidkhori2012_normal_egfr_signalling_biomd0000000452_model.initial_abstract_source_state_k46_level",
        "description": "Abstract source state K46 source parameter. Maps to SBML symbol `mwe1743f7b_ca2c_47d4_91d7_aed2748d98c5` and preserves the bundled default."
      }
    ],
    "outputs": [
      {
        "name": "egf_egfr",
        "label": "EGF EGFR",
        "maps_to": "signaling_sbml_bidkhori2012_normal_egfr_signalling_biomd0000000452_model.egf_egfr",
        "description": "EGF EGFR. Maps to SBML symbol `mw7eacabf9_d68c_491a_aba2_ec0809a8ecc8` and is emitted in native SBML units."
      },
      {
        "name": "shc_adapter_protein",
        "label": "Shc adapter protein",
        "maps_to": "signaling_sbml_bidkhori2012_normal_egfr_signalling_biomd0000000452_model.shc_adapter_protein",
        "description": "Shc adapter protein. Maps to SBML symbol `mw3c2e1b43_29ca_491a_93e9_c723a993d6fb` and is emitted in native SBML units."
      },
      {
        "name": "sos_guanine_nucleotide_exchange_factor",
        "label": "SOS guanine-nucleotide exchange factor",
        "maps_to": "signaling_sbml_bidkhori2012_normal_egfr_signalling_biomd0000000452_model.sos_guanine_nucleotide_exchange_factor",
        "description": "SOS guanine-nucleotide exchange factor. Maps to SBML symbol `mw9dcaa655_a755_426e_a3fa_1ad7c3c45575` and is emitted in native SBML units."
      },
      {
        "name": "state",
        "label": "Observable state",
        "maps_to": "signaling_sbml_bidkhori2012_normal_egfr_signalling_biomd0000000452_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "signaling_sbml_bidkhori2012_normal_egfr_signalling_biomd0000000452_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Observable labels",
        "maps_to": "signaling_sbml_bidkhori2012_normal_egfr_signalling_biomd0000000452_model.species_labels"
      }
    ]
  },
  "tags": [
    "signaling",
    "systems",
    "systems-biology",
    "sbml",
    "faithful",
    "biomodels_ebi",
    "mapk",
    "egfr",
    "ras-erk",
    "pi3k-akt",
    "jak-stat",
    "oncology"
  ],
  "title": "Bidkhori2012 - normal EGFR signalling Lab",
  "models": [
    {
      "path": "owned/models/signaling_sbml_bidkhori2012_normal_egfr_signalling_biomd0000000452_model",
      "alias": "signaling_sbml_bidkhori2012_normal_egfr_signalling_biomd0000000452_model",
      "provenance": {
        "owned_path": "owned/models/signaling_sbml_bidkhori2012_normal_egfr_signalling_biomd0000000452_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.signaling_sbml_bidkhori2012_normal_egfr_signalling_biomd0000000452_model_state"
      ],
      "from": "signaling_sbml_bidkhori2012_normal_egfr_signalling_biomd0000000452_model.state"
    },
    {
      "to": [
        "visualisation.signaling_sbml_bidkhori2012_normal_egfr_signalling_biomd0000000452_model_summary"
      ],
      "from": "signaling_sbml_bidkhori2012_normal_egfr_signalling_biomd0000000452_model.summary"
    },
    {
      "to": [
        "visualisation.signaling_sbml_bidkhori2012_normal_egfr_signalling_biomd0000000452_model_species_labels"
      ],
      "from": "signaling_sbml_bidkhori2012_normal_egfr_signalling_biomd0000000452_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Clean Biosimulant lab for JAK/STAT cytokine signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
  "schema_version": "2.0"
}

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