About lab
Clean Biosimulant lab for immune signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagemukhopadhyay2013-t-cell-receptor-proximal-signaling-reveals-emer
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebigpcrimmune-signalingvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_s_y1_u_y2_u_y3_u_b_0",
"label": "Initial S Y1 U Y2 U Y3 U B 0",
"maps_to": "signaling_sbml_mukhopadhyay2013_t_cell_receptor_proximal_signal_model1604100000_model.initial_s_y1_u_y2_u_y3_u_b_0",
"description": "Initial level of S Y1 U Y2 U Y3 U B 0. Maps to SBML symbol `S1`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "s_y1_u_y2_u_y3_u_b_0",
"label": "S Y1 U Y2 U Y3 U B 0",
"maps_to": "signaling_sbml_mukhopadhyay2013_t_cell_receptor_proximal_signal_model1604100000_model.s_y1_u_y2_u_y3_u_b_0",
"description": "S Y1 U Y2 U Y3 U B 0. Maps to SBML symbol `S1` and is emitted in native SBML units."
},
{
"name": "source_defined_e_b_state",
"label": "source-defined E(B) state",
"maps_to": "signaling_sbml_mukhopadhyay2013_t_cell_receptor_proximal_signal_model1604100000_model.source_defined_e_b_state",
"description": "source-defined E(B) state. Maps to SBML symbol `S2` and is emitted in native SBML units."
},
{
"name": "source_defined_f_b_state",
"label": "source-defined F(B) state",
"maps_to": "signaling_sbml_mukhopadhyay2013_t_cell_receptor_proximal_signal_model1604100000_model.source_defined_f_b_state",
"description": "source-defined F(B) state. Maps to SBML symbol `S3` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_mukhopadhyay2013_t_cell_receptor_proximal_signal_model1604100000_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_mukhopadhyay2013_t_cell_receptor_proximal_signal_model1604100000_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_mukhopadhyay2013_t_cell_receptor_proximal_signal_model1604100000_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"gpcr",
"immune-signaling"
],
"title": "Mukhopadhyay2013 - T cell receptor proximal signaling reveals emergent ultrasensitivity Lab",
"models": [
{
"path": "owned/models/signaling_sbml_mukhopadhyay2013_t_cell_receptor_proximal_signal_model1604100000_model",
"alias": "signaling_sbml_mukhopadhyay2013_t_cell_receptor_proximal_signal_model1604100000_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_mukhopadhyay2013_t_cell_receptor_proximal_signal_model1604100000_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_mukhopadhyay2013_t_cell_receptor_proximal_signal_model1604100000_model_state"
],
"from": "signaling_sbml_mukhopadhyay2013_t_cell_receptor_proximal_signal_model1604100000_model.state"
},
{
"to": [
"visualisation.signaling_sbml_mukhopadhyay2013_t_cell_receptor_proximal_signal_model1604100000_model_summary"
],
"from": "signaling_sbml_mukhopadhyay2013_t_cell_receptor_proximal_signal_model1604100000_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_mukhopadhyay2013_t_cell_receptor_proximal_signal_model1604100000_model_species_labels"
],
"from": "signaling_sbml_mukhopadhyay2013_t_cell_receptor_proximal_signal_model1604100000_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for immune signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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