Vasalou2010 - Multiscale Investigate Circadian Rhythmicity Pacemaker Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_cytosolic_non_phosphorylated_bmal1_protein",
        "label": "Initial Cytosolic Non Phosphorylated Bmal1 Protein",
        "maps_to": "physiology_cellml_vasalou_and_henson_2010_2f1_model.initial_cytosolic_non_phosphorylated_bmal1_protein",
        "description": "Initial value for Cytosolic Non Phosphorylated Bmal1 Protein. Maps to source symbol `BC`. Units: nanoM. Naming evidence: source metadata names `BC` as `cytosolic non-phosphorylated BMAL1 protein`.",
        "accepted_units": [
          "nanoM"
        ]
      },
      {
        "name": "initial_cytosolic_non_phosphorylated_cry_protein",
        "label": "Initial Cytosolic Non Phosphorylated Cry Protein",
        "maps_to": "physiology_cellml_vasalou_and_henson_2010_2f1_model.initial_cytosolic_non_phosphorylated_cry_protein",
        "description": "Initial value for Cytosolic Non Phosphorylated Cry Protein. Maps to source symbol `CC`. Units: nanoM. Naming evidence: source metadata names `CC` as `cytosolic non-phosphorylated CRY protein`.",
        "accepted_units": [
          "nanoM"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_vasalou_and_henson_2010_2f1_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_vasalou_and_henson_2010_2f1_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_vasalou_and_henson_2010_2f1_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_vasalou_and_henson_2010_2f1_model.variable_labels"
      },
      {
        "name": "sodium_current",
        "label": "Sodium Current",
        "maps_to": "physiology_cellml_vasalou_and_henson_2010_2f1_model.sodium_current",
        "description": "Sodium Current. Maps to source symbol `i_Na`. Units: picoA. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current_i_na_abs",
        "label": "Sodium Current I Na Abs",
        "maps_to": "physiology_cellml_vasalou_and_henson_2010_2f1_model.sodium_current_i_na_abs",
        "description": "Sodium Current I Na Abs. Maps to source symbol `i_Na_abs`. Units: picoA. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "potassium_current",
        "label": "Potassium Current",
        "maps_to": "physiology_cellml_vasalou_and_henson_2010_2f1_model.potassium_current",
        "description": "Potassium Current. Maps to source symbol `i_K`. Units: picoA. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_current",
        "label": "Calcium Current",
        "maps_to": "physiology_cellml_vasalou_and_henson_2010_2f1_model.calcium_current",
        "description": "Calcium Current. Maps to source symbol `i_Ca`. Units: picoA. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "calcium_current_i_kca",
        "label": "Calcium Current I Kca",
        "maps_to": "physiology_cellml_vasalou_and_henson_2010_2f1_model.calcium_current_i_kca",
        "description": "Calcium Current I Kca. Maps to source symbol `i_KCa`. Units: picoA. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_conductance",
        "label": "Sodium Conductance",
        "maps_to": "physiology_cellml_vasalou_and_henson_2010_2f1_model.sodium_conductance",
        "description": "Sodium Conductance. Maps to source symbol `g_Na`. Units: nanoS. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Vasalou2010 - Multiscale Investigate Circadian Rhythmicity Pacemaker Lab",
  "models": [
    {
      "path": "models/core",
      "alias": "physiology_cellml_vasalou_and_henson_2010_2f1_model",
      "parameters": {
        "model_path": "data/vasalou_2010.cellml",
        "integration_step": 0.01
      }
    },
    {
      "path": "models/visualisation",
      "alias": "visualisation"
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_vasalou_and_henson_2010_2f1_model_state"
      ],
      "from": "physiology_cellml_vasalou_and_henson_2010_2f1_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_vasalou_and_henson_2010_2f1_model_summary"
      ],
      "from": "physiology_cellml_vasalou_and_henson_2010_2f1_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_vasalou_and_henson_2010_2f1_model_trajectory"
      ],
      "from": "physiology_cellml_vasalou_and_henson_2010_2f1_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_vasalou_and_henson_2010_2f1_model_variable_labels"
      ],
      "from": "physiology_cellml_vasalou_and_henson_2010_2f1_model.variable_labels"
    }
  ],
  "package": "vasalou2010-multiscale-investigate-circadian-rhythmicit-08a5603e",
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "version": "1.0.0",
  "description": "Source-faithful physiology lab for Vasalou and Henson 2010. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}