About lab
Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagecursons2015-regulation-of-erk-mapk-signaling-in-human-epidermis
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimapkras-erkcalcium-signalinggpcrvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_calcium_amp_level",
"label": "calcium AMP",
"maps_to": "signaling_sbml_cursons2015_regulation_of_erk_mapk_signaling_in_biomd0000000659_model.initial_calcium_amp_level",
"description": "calcium AMP source parameter. Maps to SBML symbol `numCaInputAmp` and preserves the bundled default."
},
{
"name": "initial_calcium_baseline_level",
"label": "calcium Baseline",
"maps_to": "signaling_sbml_cursons2015_regulation_of_erk_mapk_signaling_in_biomd0000000659_model.initial_calcium_baseline_level",
"description": "calcium Baseline source parameter. Maps to SBML symbol `numCaInputBaseline` and preserves the bundled default."
},
{
"name": "initial_calcium_m_amp_level",
"label": "calcium M AMP",
"maps_to": "signaling_sbml_cursons2015_regulation_of_erk_mapk_signaling_in_biomd0000000659_model.initial_calcium_m_amp_level",
"description": "calcium M AMP source parameter. Maps to SBML symbol `numCaMInputAmp` and preserves the bundled default."
}
],
"outputs": [
{
"name": "cytosolic_phosphorylated_erk",
"label": "cytosolic phosphorylated ERK",
"maps_to": "signaling_sbml_cursons2015_regulation_of_erk_mapk_signaling_in_biomd0000000659_model.cytosolic_phosphorylated_erk",
"description": "cytosolic phosphorylated ERK. Maps to SBML symbol `pERK_cyto` and is emitted in native SBML units."
},
{
"name": "nuclear_phosphorylated_erk",
"label": "nuclear phosphorylated ERK",
"maps_to": "signaling_sbml_cursons2015_regulation_of_erk_mapk_signaling_in_biomd0000000659_model.nuclear_phosphorylated_erk",
"description": "nuclear phosphorylated ERK. Maps to SBML symbol `pERK_nuc` and is emitted in native SBML units."
},
{
"name": "calmodulin",
"label": "calmodulin",
"maps_to": "signaling_sbml_cursons2015_regulation_of_erk_mapk_signaling_in_biomd0000000659_model.calmodulin",
"description": "calmodulin. Maps to SBML symbol `CaM_memb` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_cursons2015_regulation_of_erk_mapk_signaling_in_biomd0000000659_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_cursons2015_regulation_of_erk_mapk_signaling_in_biomd0000000659_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_cursons2015_regulation_of_erk_mapk_signaling_in_biomd0000000659_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"mapk",
"ras-erk",
"calcium-signaling",
"gpcr"
],
"title": "Cursons2015 - Regulation of ERK-MAPK signaling in human epidermis Lab",
"models": [
{
"path": "owned/models/signaling_sbml_cursons2015_regulation_of_erk_mapk_signaling_in_biomd0000000659_model",
"alias": "signaling_sbml_cursons2015_regulation_of_erk_mapk_signaling_in_biomd0000000659_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_cursons2015_regulation_of_erk_mapk_signaling_in_biomd0000000659_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_cursons2015_regulation_of_erk_mapk_signaling_in_biomd0000000659_model_state"
],
"from": "signaling_sbml_cursons2015_regulation_of_erk_mapk_signaling_in_biomd0000000659_model.state"
},
{
"to": [
"visualisation.signaling_sbml_cursons2015_regulation_of_erk_mapk_signaling_in_biomd0000000659_model_summary"
],
"from": "signaling_sbml_cursons2015_regulation_of_erk_mapk_signaling_in_biomd0000000659_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_cursons2015_regulation_of_erk_mapk_signaling_in_biomd0000000659_model_species_labels"
],
"from": "signaling_sbml_cursons2015_regulation_of_erk_mapk_signaling_in_biomd0000000659_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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