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Bouchnita2020 Model For Blood Coagulation Under Venous Flow Condition Lab

About lab

A numerical simulation model to reproduce in vitro experiments of blood coagulation in microfluidic capillaries. A reduced one-equation model of thrombin distribution from the previous model under sim.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebouchnita2020-model-for-blood-coagulation-under-venous-flow-cond
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_atiii",
        "label": "Initial Atiii",
        "maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.initial_atiii",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ATIII`."
      },
      {
        "name": "initial_model_state_ii",
        "label": "Initial Model State Ii",
        "maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.initial_model_state_ii",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `II`."
      },
      {
        "name": "initial_vi_ia",
        "label": "Initial Vi Ia",
        "maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.initial_vi_ia",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `VIIa`."
      },
      {
        "name": "initial_model_state_tf",
        "label": "Initial Model State Tf",
        "maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.initial_model_state_tf",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `TF`."
      },
      {
        "name": "initial_model_state_xa",
        "label": "Initial Model State Xa",
        "maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.initial_model_state_xa",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Xa`."
      },
      {
        "name": "initial_i_ia",
        "label": "Initial I Ia",
        "maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.initial_i_ia",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `IIa`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.species_labels"
      },
      {
        "name": "atiii",
        "maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.atiii"
      },
      {
        "name": "model_state_ii",
        "maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.model_state_ii"
      },
      {
        "name": "vi_ia",
        "maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.vi_ia"
      },
      {
        "name": "model_state_tf",
        "maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.model_state_tf"
      },
      {
        "name": "model_state_xa",
        "maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.model_state_xa"
      },
      {
        "name": "i_ia",
        "maps_to": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.i_ia"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Bouchnita2020 Model For Blood Coagulation Under Venous Flow Condition Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model",
      "alias": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model_state"
      ],
      "from": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model_summary"
      ],
      "from": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model_species_labels"
      ],
      "from": "systemsbiology_sbml_bouchnita2020_model_for_blood_coagulation_under_model2011030003_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "A numerical simulation model to reproduce in vitro experiments of blood coagulation in microfluidic capillaries. A reduced one-equation model of thrombin distribution from the previous model under sim.",
  "schema_version": "2.0"
}

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