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Romond1999 - Alternating Oscillations Chaos Two Coupled Biochemical Lab

About lab

Source-faithful physiology lab for Romond, Rustici, Gonze, Goldbeter, 1999. Public controls and outputs are mapped to real source symbols for oscillatory physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packageromond1999-alternating-oscillations-chaos-two-coupled-biochemica
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_c_1_concentration",
        "label": "Initial C 1 Concentration",
        "maps_to": "physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model.initial_c_1_concentration",
        "description": "Initial value for C 1 Concentration. Maps to source symbol `C_1`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "micromolar"
        ]
      },
      {
        "name": "initial_c_2_concentration",
        "label": "Initial C 2 Concentration",
        "maps_to": "physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model.initial_c_2_concentration",
        "description": "Initial value for C 2 Concentration. Maps to source symbol `C_2`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "micromolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model.variable_labels"
      },
      {
        "name": "c_1_concentration",
        "label": "C 1 Concentration",
        "maps_to": "physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model.c_1_concentration",
        "description": "C 1 Concentration. Maps to source symbol `C_1`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "c_2_concentration",
        "label": "C 2 Concentration",
        "maps_to": "physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model.c_2_concentration",
        "description": "C 2 Concentration. Maps to source symbol `C_2`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_state_m_1",
        "label": "Model State M 1 (source M_1)",
        "maps_to": "physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model.model_state_m_1",
        "description": "Model State M 1 (source M_1). Maps to source symbol `M_1`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "model_state_m_2",
        "label": "Model State M 2 (source M_2)",
        "maps_to": "physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model.model_state_m_2",
        "description": "Model State M 2 (source M_2). Maps to source symbol `M_2`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "model_state_x_1",
        "label": "Model State X 1 (source X_1)",
        "maps_to": "physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model.model_state_x_1",
        "description": "Model State X 1 (source X_1). Maps to source symbol `X_1`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      },
      {
        "name": "model_state_x_2",
        "label": "Model State X 2 (source X_2)",
        "maps_to": "physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model.model_state_x_2",
        "description": "Model State X 2 (source X_2). Maps to source symbol `X_2`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      }
    ]
  },
  "title": "Romond1999 - Alternating Oscillations Chaos Two Coupled Biochemical Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model",
      "alias": "physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model",
      "parameters": {
        "model_path": "data/romond_rustici_gonze_goldbeter_1999.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model_state"
      ],
      "from": "physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model_summary"
      ],
      "from": "physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model_trajectory"
      ],
      "from": "physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model_variable_labels"
      ],
      "from": "physiology_cellml_romond_rustici_gonze_goldbeter_1999_romondrusticigonzegoldbeter1999_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Romond, Rustici, Gonze, Goldbeter, 1999. Public controls and outputs are mapped to real source symbols for oscillatory physiology.",
  "schema_version": "2.0"
}

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