About lab
Clean Biosimulant lab for calcium and second-messenger signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagepepke2010-full-ca2-cam-mcamkii-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicalcium-signalingneurosciencevisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_kca_m2c_tot",
"label": "Initial Kca M2C Tot",
"maps_to": "signaling_sbml_pepke2010_full_ca2_cam_mcamkii_model1001150000_model.initial_kca_m2c_tot",
"description": "Initial level of Kca M2C Tot. Maps to SBML symbol `KCaM2C_tot`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "calcium_m_0_1",
"label": "calcium M 0 1",
"maps_to": "signaling_sbml_pepke2010_full_ca2_cam_mcamkii_model1001150000_model.calcium_m_0_1",
"description": "calcium M 0 1. Maps to SBML symbol `CaM_0_1` and is emitted in native SBML units."
},
{
"name": "calcium_m_0_2",
"label": "calcium M 0 2",
"maps_to": "signaling_sbml_pepke2010_full_ca2_cam_mcamkii_model1001150000_model.calcium_m_0_2",
"description": "calcium M 0 2. Maps to SBML symbol `CaM_0_2` and is emitted in native SBML units."
},
{
"name": "calcium_m_1_0",
"label": "calcium M 1 0",
"maps_to": "signaling_sbml_pepke2010_full_ca2_cam_mcamkii_model1001150000_model.calcium_m_1_0",
"description": "calcium M 1 0. Maps to SBML symbol `CaM_1_0` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_pepke2010_full_ca2_cam_mcamkii_model1001150000_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_pepke2010_full_ca2_cam_mcamkii_model1001150000_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_pepke2010_full_ca2_cam_mcamkii_model1001150000_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"calcium-signaling",
"neuroscience"
],
"title": "Pepke2010_Full_Ca2/CaM_mCaMKII Lab",
"models": [
{
"path": "owned/models/signaling_sbml_pepke2010_full_ca2_cam_mcamkii_model1001150000_model",
"alias": "signaling_sbml_pepke2010_full_ca2_cam_mcamkii_model1001150000_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_pepke2010_full_ca2_cam_mcamkii_model1001150000_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_pepke2010_full_ca2_cam_mcamkii_model1001150000_model_state"
],
"from": "signaling_sbml_pepke2010_full_ca2_cam_mcamkii_model1001150000_model.state"
},
{
"to": [
"visualisation.signaling_sbml_pepke2010_full_ca2_cam_mcamkii_model1001150000_model_summary"
],
"from": "signaling_sbml_pepke2010_full_ca2_cam_mcamkii_model1001150000_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_pepke2010_full_ca2_cam_mcamkii_model1001150000_model_species_labels"
],
"from": "signaling_sbml_pepke2010_full_ca2_cam_mcamkii_model1001150000_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for calcium and second-messenger signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
}Sign in to start your own run. Public-lab history stays visible here.
Select a run from History to view its results.